1 HisKA#1
129-172 aa · 44 aa · 13.0% of protein
Raw token
HisKA:129:0.00000667:172:50:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M72_RS03065
Histidine kinase, Classic
Roseburia faecis · GCF_001406815
ClassHKTypeClassicLength338 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406815#M72_RS03065Stable P2CS identifier used across views.
GenomeGCF_001406815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length338 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 338 aa (42.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa338 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
228-328 aa · 101 aa · 29.9% of protein
Raw token
HATPase_c:228:9.61e-24:328:101:109- Raw architecture: HisKA:129:0.00000667:172:50:64#HATPase_c:228:9.61e-24:328:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406815::NZ_CVRR01000005.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span445694-447369Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM72_04161RefSeq proteinWP_055067112.1
Context group ID
GCF_001406815::NZ_CVRR01000005.1::G00021Context members
M72_RS03065M72_RS03070
Partner locus tags
M72_RS03065M72_RS03070
Partner old locus tags
M72_04161M72_04171
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055067112.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WF49Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WF49_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM72_RS03065Primary locus identifier stored in the genes table.
Old locus tagM72_04161Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRR01000005.1Sequence record reported by the local genomic context database.
Genomic interval445 694-446 710 nt1 017 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span445 694-447 369 ntGCF_001406815::NZ_CVRR01000005.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406815::NZ_CVRR01000005.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span445 694-447 369 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
445 694 nt447 369 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
M72_RS03065GCF_001406815#M72_RS03065
HKClassicCurrent focus
445 694-446 710 nt · Reverse (-)
M72_RS03070GCF_001406815#M72_RS03070
RROmpR
446 707-447 369 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS03065The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2842230
Simplified PFAM architecture for HKOC_2842230
PFAM domain coverage: 110 / 338 aa (32.5%)
1 aa338 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-330]
- Domain count: 1
- Matched identifier: HKOC_2842230
- Positioned domains: HATPase_c 221-330
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS03065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001406815
AssemblyM72 · Contighaploid
Genome composition3 334 694 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key