1 Response_reg#1
8-106 aa · 99 aa · 19.2% of protein
Raw token
Response_reg:8:1.1e-20:106:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M72_RS02765
Response regulator, unclassified
Roseburia faecis · GCF_001406815
ClassRRTypeunclassifiedLength516 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406815#M72_RS02765Stable P2CS identifier used across views.
GenomeGCF_001406815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length516 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage178 / 516 aa (34.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa516 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
423-464 aa · 42 aa · 8.1% of protein
Raw token
HTH_AraC:423:0.000000731:464:42:423 HTH_AraC#3
476-512 aa · 37 aa · 7.2% of protein
Raw token
HTH_AraC:476:0.0000426:512:37:42- Raw architecture: Response_reg:8:1.1e-20:106:99:111#HTH_AraC:423:0.000000731:464:42:42#HTH_AraC:476:0.0000426:512:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406815::NZ_CVRR01000005.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span385649-388910Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM72_03541RefSeq proteinWP_055067076.1
Context group ID
GCF_001406815::NZ_CVRR01000005.1::G00015Context members
M72_RS02765M72_RS02770
Partner locus tags
M72_RS02765M72_RS02770
Partner old locus tags
M72_03541M72_03551
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055067076.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WDB3Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WDB3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM72_RS02765Primary locus identifier stored in the genes table.
Old locus tagM72_03541Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRR01000005.1Sequence record reported by the local genomic context database.
Genomic interval385 649-387 199 nt1 551 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span385 649-388 910 ntGCF_001406815::NZ_CVRR01000005.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406815::NZ_CVRR01000005.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span385 649-388 910 nt3 262 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
385 649 nt388 910 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
M72_RS02765GCF_001406815#M72_RS02765
RRunclassifiedCurrent focus
385 649-387 199 nt · Reverse (-)
M72_RS02770GCF_001406815#M72_RS02770
HKClassic
387 168-388 910 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS02765The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0134319
Simplified PFAM architecture for RROC_0134319
PFAM domain coverage: 179 / 516 aa (34.7%)
1 aa516 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[7-108] | HTH_18[437-513]
- Domain count: 2
- Matched identifier: RROC_0134319
- Positioned domains: Response_reg 7-108 ; Response_reg 7-108 ; HTH_18 437-513 ; HTH_18 437-513
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS02765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001406815
AssemblyM72 · Contighaploid
Genome composition3 334 694 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key