1 Response_reg#1
4-118 aa · 115 aa · 21.7% of protein
Raw token
Response_reg:4:1.18e-29:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M72_RS01220
Response regulator, unclassified
Roseburia faecis · GCF_001406815
ClassRRTypeunclassifiedLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406815#M72_RS01220Stable P2CS identifier used across views.
GenomeGCF_001406815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage196 / 529 aa (37.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa529 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
434-475 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:434:0.000000123:475:42:423 HTH_AraC#3
487-525 aa · 39 aa · 7.4% of protein
Raw token
HTH_AraC:487:0.0000142:525:39:42- Raw architecture: Response_reg:4:1.18e-29:118:115:111#HTH_AraC:434:0.000000123:475:42:42#HTH_AraC:487:0.0000142:525:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406815::NZ_CVRR01000005.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43764-47170Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM72_00411RefSeq proteinWP_022046039.1
Context group ID
GCF_001406815::NZ_CVRR01000005.1::G00009Context members
M72_RS01220M72_RS01225
Partner locus tags
M72_RS01220M72_RS01225
Partner old locus tags
M72_00411M72_00421
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022046039.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WAU2Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WAU2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM72_RS01220Primary locus identifier stored in the genes table.
Old locus tagM72_00411Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRR01000005.1Sequence record reported by the local genomic context database.
Genomic interval43 764-45 353 nt1 590 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 764-47 170 ntGCF_001406815::NZ_CVRR01000005.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406815::NZ_CVRR01000005.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span43 764-47 170 nt3 407 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 764 nt47 170 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
M72_RS01220GCF_001406815#M72_RS01220
RRunclassifiedCurrent focus
43 764-45 353 nt · Reverse (-)
M72_RS01225GCF_001406815#M72_RS01225
HKClassic
45 347-47 170 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS12250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0112917
Simplified PFAM architecture for RROC_0112917
PFAM domain coverage: 193 / 529 aa (36.5%)
1 aa529 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[448-526]
- Domain count: 2
- Matched identifier: RROC_0112917
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 448-526 ; HTH_18 448-526
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS12250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001406815
AssemblyM72 · Contighaploid
Genome composition3 334 694 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key