1 HisKA#1
88-154 aa · 67 aa · 21.1% of protein
Raw token
HisKA:88:0.00000000587:154:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA59_RS09945
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001406755
ClassHKTypeClassicLength317 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406755#ARA59_RS09945Stable P2CS identifier used across views.
GenomeGCF_001406755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length317 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 317 aa (55.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa317 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-308 aa · 109 aa · 34.4% of protein
Raw token
HATPase_c:200:5.58e-17:308:110:109- Raw architecture: HisKA:88:0.00000000587:154:67:64#HATPase_c:200:5.58e-17:308:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406755::NZ_CZBX01000009.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44919-46527Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852502_02028RefSeq proteinWP_064773974.1
Context group ID
GCF_001406755::NZ_CZBX01000009.1::G00022Context members
ARA59_RS09940ARA59_RS09945
Partner locus tags
ARA59_RS09940ARA59_RS09945
Partner old locus tags
ERS852502_02027ERS852502_02028
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064773974.1Primary protein accession used for annex mappings.
UniProt accessionA0A175A2N7Primary UniProt accession resolved in the annex database.
UniProt IDA0A175A2N7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA59_RS09945Primary locus identifier stored in the genes table.
Old locus tagERS852502_02028Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBX01000009.1Sequence record reported by the local genomic context database.
Genomic interval45 574-46 527 nt954 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 919-46 527 ntGCF_001406755::NZ_CZBX01000009.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406755::NZ_CZBX01000009.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBX01000009.1All displayed genes belong to this local TCS context.
Neighborhood span44 919-46 527 nt1 609 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 919 nt46 527 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA59_RS09940GCF_001406755#ARA59_RS09940
RROmpR
44 919-45 572 nt · Forward (+)
ARA59_RS09945GCF_001406755#ARA59_RS09945
HKClassicCurrent focus
45 574-46 527 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406755#ARA59_RS09945The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2870958
Simplified PFAM architecture for HKOC_2870958
PFAM domain coverage: 174 / 317 aa (54.9%)
1 aa317 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-154] | HATPase_c[200-306]
- Domain count: 2
- Matched identifier: HKOC_2870958
- Positioned domains: HisKA 88-154 ; HATPase_c 200-306
Cluster members and taxonomy
Representative gene: GCF_001406755#ARA59_RS09945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001406755
Assembly14207_7#12 · Scaffoldhaploid
Genome composition3 017 868 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 77 · HK 39 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key