1 HAMP#1
138-202 aa · 65 aa · 14.6% of protein
Raw token
HAMP:138:0.000000004:202:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA59_RS01020
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001406755
ClassHKTypeClassicLength444 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406755#ARA59_RS01020Stable P2CS identifier used across views.
GenomeGCF_001406755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length444 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 444 aa (53.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa444 aa
Domain-by-domain annotation3 items
2 HisKA#2
219-288 aa · 70 aa · 15.8% of protein
Raw token
HisKA:219:0.000000000754:288:70:643 HATPase_c#3
337-439 aa · 103 aa · 23.2% of protein
Raw token
HATPase_c:337:3.39e-23:439:104:109- Raw architecture: HAMP:138:0.000000004:202:65:69#HisKA:219:0.000000000754:288:70:64#HATPase_c:337:3.39e-23:439:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406755::NZ_CZBX01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span226406-228402Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852502_00209RefSeq proteinWP_055170568.1
Context group ID
GCF_001406755::NZ_CZBX01000001.1::G00001Context members
ARA59_RS01020ARA59_RS01025
Partner locus tags
ARA59_RS01020ARA59_RS01025
Partner old locus tags
ERS852502_00209ERS852502_00210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055170568.1Primary protein accession used for annex mappings.
UniProt accessionA0A174ZDC6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174ZDC6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA59_RS01020Primary locus identifier stored in the genes table.
Old locus tagERS852502_00209Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBX01000001.1Sequence record reported by the local genomic context database.
Genomic interval226 406-227 740 nt1 335 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span226 406-228 402 ntGCF_001406755::NZ_CZBX01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406755::NZ_CZBX01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBX01000001.1All displayed genes belong to this local TCS context.
Neighborhood span226 406-228 402 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
226 406 nt228 402 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA59_RS01020GCF_001406755#ARA59_RS01020
HKClassicCurrent focus
226 406-227 740 nt · Reverse (-)
ARA59_RS01025GCF_001406755#ARA59_RS01025
RROmpR
227 728-228 402 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406755#ARA59_RS01020The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2033148
Simplified PFAM architecture for HKOC_2033148
PFAM domain coverage: 216 / 444 aa (48.6%)
1 aa444 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[156-202] | HisKA[220-287] | HATPase_c[337-437]
- Domain count: 3
- Matched identifier: HKOC_2033148
- Positioned domains: HAMP 156-202 ; HisKA 220-287 ; HATPase_c 337-437
Cluster members and taxonomy
Representative gene: GCF_001406755#ARA59_RS01020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001406755
Assembly14207_7#12 · Scaffoldhaploid
Genome composition3 017 868 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 77 · HK 39 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key