1 GGDEF#1
195-349 aa · 155 aa · 14.7% of protein
Raw token
GGDEF:195:1.41e-23:349:161:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA59_RS08985
Histidine kinase, Hybrid
[Ruminococcus] torques · GCF_001406755
ClassHKTypeHybridLength1057 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406755#ARA59_RS08985Stable P2CS identifier used across views.
GenomeGCF_001406755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1057 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage460 / 1057 aa (43.5%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1057 aa
Domain-by-domain annotation4 items
2 HisKA#2
670-736 aa · 67 aa · 6.3% of protein
Raw token
HisKA:670:2.83e-16:736:67:643 HATPase_c#3
783-900 aa · 118 aa · 11.2% of protein
Raw token
HATPase_c:783:1.29e-27:900:118:1094 Response_reg#4
932-1051 aa · 120 aa · 11.4% of protein
Raw token
Response_reg:932:3.52e-24:1051:120:111- Raw architecture: GGDEF:195:1.41e-23:349:161:160#HisKA:670:2.83e-16:736:67:64#HATPase_c:783:1.29e-27:900:118:109#Response_reg:932:3.52e-24:1051:120:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406755::NZ_CZBX01000008.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4928-8101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852502_01831RefSeq proteinWP_055172610.1
Context group ID
GCF_001406755::NZ_CZBX01000008.1::G00020Context members
ARA59_RS08985
Partner locus tags
ARA59_RS08985
Partner old locus tags
ERS852502_01831
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055172610.1Primary protein accession used for annex mappings.
UniProt accessionA0A174ZN19Primary UniProt accession resolved in the annex database.
UniProt IDA0A174ZN19_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA59_RS08985Primary locus identifier stored in the genes table.
Old locus tagERS852502_01831Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBX01000008.1Sequence record reported by the local genomic context database.
Genomic interval4 928-8 101 nt3 174 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 928-8 101 ntGCF_001406755::NZ_CZBX01000008.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406755::NZ_CZBX01000008.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBX01000008.1All displayed genes belong to this local TCS context.
Neighborhood span4 928-8 101 nt3 174 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 928 nt8 101 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA59_RS08985GCF_001406755#ARA59_RS08985
HKHybridCurrent focus
4 928-8 101 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406755#ARA59_RS08985The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0254270
Simplified PFAM architecture for HKOC_0254270
PFAM domain coverage: 455 / 1057 aa (43.0%)
1 aa1057 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[196-347] | HisKA[670-736] | HATPase_c[783-899] | Response_reg[932-1050]
- Domain count: 4
- Matched identifier: HKOC_0254270
- Positioned domains: GGDEF 196-347 ; HisKA 670-736 ; HATPase_c 783-899 ; Response_reg 932-1050
Cluster members and taxonomy
Representative gene: GCF_001406755#ARA59_RS08985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001406755
Assembly14207_7#12 · Scaffoldhaploid
Genome composition3 017 868 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 77 · HK 39 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key