1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:1.68e-24:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA00_RS04655
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_001406655
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406655#ARA00_RS04655Stable P2CS identifier used across views.
GenomeGCF_001406655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 223 aa (83.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:147:1.08e-28:222:77:77- Raw architecture: Response_reg:4:1.68e-24:113:111:111#Trans_reg_C:147:1.08e-28:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406655::NZ_CYZG01000003.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span189984-190655Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852409_00950RefSeq proteinWP_055168601.1
Context group ID
GCF_001406655::NZ_CYZG01000003.1::G00012Context members
ARA00_RS04655
Partner locus tags
ARA00_RS04655
Partner old locus tags
ERS852409_00950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055168601.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5NT44Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5NT44_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA00_RS04655Primary locus identifier stored in the genes table.
Old locus tagERS852409_00950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZG01000003.1Sequence record reported by the local genomic context database.
Genomic interval189 984-190 655 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span189 984-190 655 ntGCF_001406655::NZ_CYZG01000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406655::NZ_CYZG01000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span189 984-190 655 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
189 984 nt190 655 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA00_RS04655GCF_001406655#ARA00_RS04655
RROmpRCurrent focus
189 984-190 655 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406655#ARA00_RS04655The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1593218
Simplified PFAM architecture for RROC_1593218
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1593218
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_001406655#ARA00_RS04655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_001406655
Assembly13414_6#36 · Scaffoldhaploid
Genome composition3 109 807 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 37 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key