1 Response_reg#1
6-115 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:6:1.54e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA00_RS01135
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_001406655
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406655#ARA00_RS01135Stable P2CS identifier used across views.
GenomeGCF_001406655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:153:1.6e-36:228:76:77- Raw architecture: Response_reg:6:1.54e-38:115:111:111#Trans_reg_C:153:1.6e-36:228:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406655::NZ_CYZG01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span261467-263588Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852409_00232RefSeq proteinWP_009243920.1
Context group ID
GCF_001406655::NZ_CYZG01000001.1::G00005Context members
ARA00_RS01135ARA00_RS01140
Partner locus tags
ARA00_RS01135ARA00_RS01140
Partner old locus tags
ERS852409_00232ERS852409_00233
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009243920.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NVP5Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NVP5_MEDG5Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA00_RS01135Primary locus identifier stored in the genes table.
Old locus tagERS852409_00232Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZG01000001.1Sequence record reported by the local genomic context database.
Genomic interval261 467-262 159 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span261 467-263 588 ntGCF_001406655::NZ_CYZG01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406655::NZ_CYZG01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span261 467-263 588 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
261 467 nt263 588 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA00_RS01135GCF_001406655#ARA00_RS01135
RROmpRCurrent focus
261 467-262 159 nt · Forward (+)
ARA00_RS01140GCF_001406655#ARA00_RS01140
HKClassic
262 197-263 588 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS03320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202747
Simplified PFAM architecture for RROC_1202747
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1202747
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS03320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_001406655
Assembly13414_6#36 · Scaffoldhaploid
Genome composition3 109 807 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 37 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key