1 Response_reg#1
4-118 aa · 115 aa · 50.4% of protein
Raw token
Response_reg:4:5.92e-25:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA43_RS08310
Response regulator, unclassified
Clostridium paraputrificum · GCF_001406515
ClassRRTypeunclassifiedLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406515#ARA43_RS08310Stable P2CS identifier used across views.
GenomeGCF_001406515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 228 aa (67.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HTH_11#2
164-201 aa · 38 aa · 16.7% of protein
Raw token
HTH_11:164:0.000000625:201:38:52- Raw architecture: Response_reg:4:5.92e-25:118:115:111#HTH_11:164:0.000000625:201:38:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406515::NZ_CZBQ01000007.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span53904-54590Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852567_01724RefSeq proteinWP_027097849.1
Context group ID
GCF_001406515::NZ_CZBQ01000007.1::G00018Context members
ARA43_RS08310
Partner locus tags
ARA43_RS08310
Partner old locus tags
ERS852567_01724
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027097849.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DFB3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DFB3_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA43_RS08310Primary locus identifier stored in the genes table.
Old locus tagERS852567_01724Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBQ01000007.1Sequence record reported by the local genomic context database.
Genomic interval53 904-54 590 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 904-54 590 ntGCF_001406515::NZ_CZBQ01000007.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406515::NZ_CZBQ01000007.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBQ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span53 904-54 590 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 904 nt54 590 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA43_RS08310GCF_001406515#ARA43_RS08310
RRunclassifiedCurrent focus
53 904-54 590 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926565#AB5793_RS07065Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_112 domains in the representative PFAM annotation.
PFAM architecture for RROC_0901148
Simplified PFAM architecture for RROC_0901148
PFAM domain coverage: 154 / 240 aa (64.2%)
1 aa240 aa
Response_regHTH_11
- Simplified architecture: Response_reg + HTH_11
- Raw architecture: Response_reg[16-129] | HTH_11[177-216]
- Domain count: 2
- Matched identifier: RROC_0901148
- Positioned domains: Response_reg 16-129 ; HTH_11 177-216
Cluster members and taxonomy
Representative gene: GCF_040926565#AB5793_RS07065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001406515
Assembly14207_7#78 · Scaffoldhaploid
Genome composition3 671 430 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 71 · HK 37 · RR 31CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key