1 Response_reg#1
9-116 aa · 108 aa · 31.5% of protein
Raw token
Response_reg:9:6.29e-21:116:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA43_RS01645
Response regulator RpfG family
Clostridium paraputrificum · GCF_001406515
ClassRRTypeRpfGLength343 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001406515#ARA43_RS01645Stable P2CS identifier used across views.
GenomeGCF_001406515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage233 / 343 aa (67.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HD#2
168-292 aa · 125 aa · 36.4% of protein
Raw token
HD:168:2.93e-17:292:125:110- Raw architecture: Response_reg:9:6.29e-21:116:108:111#HD:168:2.93e-17:292:125:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001406515::NZ_CZBQ01000001.1::G00003
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span358371-362639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852567_00345RefSeq proteinWP_055183524.1
Context group ID
GCF_001406515::NZ_CZBQ01000001.1::G00003Context members
ARA43_RS01630ARA43_RS01640ARA43_RS01645
Partner locus tags
ARA43_RS01630ARA43_RS01640ARA43_RS01645
Partner old locus tags
ERS852567_00342ERS852567_00344ERS852567_00345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055183524.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA43_RS01645Primary locus identifier stored in the genes table.
Old locus tagERS852567_00345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval361 608-362 639 nt1 032 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span358 371-362 639 ntGCF_001406515::NZ_CZBQ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406515::NZ_CZBQ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span358 371-362 639 nt4 269 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
358 371 nt362 639 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
ARA43_RS01630GCF_001406515#ARA43_RS01630
RRunclassified
358 371-359 150 nt · Reverse (-)
ARA43_RS01640GCF_001406515#ARA43_RS01640
HKHybrid
359 537-361 624 nt · Reverse (-)
ARA43_RS01645GCF_001406515#ARA43_RS01645
RRRpfGCurrent focus
361 608-362 639 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS01645The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0496020
Simplified PFAM architecture for RROC_0496020
PFAM domain coverage: 272 / 343 aa (79.3%)
1 aa343 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[8-115] | HD_5[159-322]
- Domain count: 2
- Matched identifier: RROC_0496020
- Positioned domains: Response_reg 8-115 ; Response_reg 8-115 ; HD_5 159-322 ; HD_5 159-322
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS01645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001406515
Assembly14207_7#78 · Scaffoldhaploid
Genome composition3 671 430 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 71 · HK 37 · RR 31CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key