1 Cache_3-Cache_2#1
135-279 aa · 145 aa · 20.3% of protein
Raw token
Cache_3-Cache_2:135:0.0000000292:279:151:291P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS08565
Histidine kinase, Hybrid
Coprococcus comes · GCF_001406395
ClassHKTypeHybridLength715 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406395#ARA05_RS08565Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Cache_3-Cache_2HisKAHATPase_cResponse_reg
Protein length715 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage443 / 715 aa (62.0%)Merged over positioned domains only.
Domain description1 Cache_3-Cache_2,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa715 aa
Domain-by-domain annotation4 items
2 HisKA#2
347-408 aa · 62 aa · 8.7% of protein
Raw token
HisKA:347:0.0000000504:408:62:643 HATPase_c#3
454-578 aa · 125 aa · 17.5% of protein
Raw token
HATPase_c:454:5.24e-26:578:126:1094 Response_reg#4
598-708 aa · 111 aa · 15.5% of protein
Raw token
Response_reg:598:0.00000000000181:708:114:111- Raw architecture: Cache_3-Cache_2:135:0.0000000292:279:151:291#HisKA:347:0.0000000504:408:62:64#HATPase_c:454:5.24e-26:578:126:109#Response_reg:598:0.00000000000181:708:114:111
- Domain description: 1 Cache_3-Cache_2,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406395::NZ_CYZK01000010.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span60974-63121Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_01773RefSeq proteinWP_055261289.1
Context group ID
GCF_001406395::NZ_CYZK01000010.1::G00023Context members
ARA05_RS08565
Partner locus tags
ARA05_RS08565
Partner old locus tags
ERS852481_01773
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055261289.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DZW4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DZW4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS08565Primary locus identifier stored in the genes table.
Old locus tagERS852481_01773Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000010.1Sequence record reported by the local genomic context database.
Genomic interval60 974-63 121 nt2 148 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 974-63 121 ntGCF_001406395::NZ_CYZK01000010.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000010.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000010.1All displayed genes belong to this local TCS context.
Neighborhood span60 974-63 121 nt2 148 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 974 nt63 121 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA05_RS08565GCF_001406395#ARA05_RS08565
HKHybridCurrent focus
60 974-63 121 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406395#ARA05_RS08565The current gene is the representative for this cluster.
PFAM architecturesCache_2 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0742426
Simplified PFAM architecture for HKOC_0742426
PFAM domain coverage: 419 / 715 aa (58.6%)
1 aa715 aa
sCache_2HisKAHATPase_cResponse_reg
- Simplified architecture: sCache_2 + HisKA + HATPase_c + Response_reg
- Raw architecture: sCache_2[160-281] | HisKA[348-409] | HATPase_c[455-578] | Response_reg[598-708]
- Domain count: 4
- Matched identifier: HKOC_0742426
- Positioned domains: sCache_2 160-281 ; HisKA 348-409 ; HATPase_c 455-578 ; Response_reg 598-708
Cluster members and taxonomy
Representative gene: GCF_001406395#ARA05_RS08565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key