1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.00000345:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS00810
Histidine kinase, Classic
Coprococcus comes · GCF_001406395
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406395#ARA05_RS00810Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 343 aa (50.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
235-341 aa · 107 aa · 31.2% of protein
Raw token
HATPase_c:235:2.15e-28:341:107:109- Raw architecture: HisKA:123:0.00000345:189:67:64#HATPase_c:235:2.15e-28:341:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406395::NZ_CYZK01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span190549-192266Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_00169RefSeq proteinWP_055260455.1
Context group ID
GCF_001406395::NZ_CYZK01000001.1::G00003Context members
ARA05_RS00810ARA05_RS00815
Partner locus tags
ARA05_RS00810ARA05_RS00815
Partner old locus tags
ERS852481_00169ERS852481_00170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055260455.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS00810Primary locus identifier stored in the genes table.
Old locus tagERS852481_00169Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000001.1Sequence record reported by the local genomic context database.
Genomic interval190 549-191 580 nt1 032 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span190 549-192 266 ntGCF_001406395::NZ_CYZK01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span190 549-192 266 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
190 549 nt192 266 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA05_RS00810GCF_001406395#ARA05_RS00810
HKClassicCurrent focus
190 549-191 580 nt · Reverse (-)
ARA05_RS00815GCF_001406395#ARA05_RS00815
RROmpR
191 580-192 266 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406395#ARA05_RS00810The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828284
Simplified PFAM architecture for HKOC_2828284
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2828284
- Positioned domains: HisKA 125-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_001406395#ARA05_RS00810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key