1 HAMP#1
179-246 aa · 68 aa · 14.2% of protein
Raw token
HAMP:179:0.000000000000024:246:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA17_RS00830
Histidine kinase, Classic
Agathobacter rectalis · GCF_001406375
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406375#ARA17_RS00830Stable P2CS identifier used across views.
GenomeGCF_001406375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 479 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation3 items
2 HisKA#2
253-312 aa · 60 aa · 12.5% of protein
Raw token
HisKA:253:4.07e-16:312:60:643 HATPase_c#3
364-474 aa · 111 aa · 23.2% of protein
Raw token
HATPase_c:364:2.3e-32:474:111:109- Raw architecture: HAMP:179:0.000000000000024:246:68:69#HisKA:253:4.07e-16:312:60:64#HATPase_c:364:2.3e-32:474:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406375::NZ_CYXM01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span173821-175965Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852580_00176RefSeq proteinWP_055236744.1
Context group ID
GCF_001406375::NZ_CYXM01000001.1::G00004Context members
ARA17_RS00830ARA17_RS00835
Partner locus tags
ARA17_RS00830ARA17_RS00835
Partner old locus tags
ERS852580_00176ERS852580_00177
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055236744.1Primary protein accession used for annex mappings.
UniProt accessionA0A173R024Primary UniProt accession resolved in the annex database.
UniProt IDA0A173R024_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA17_RS00830Primary locus identifier stored in the genes table.
Old locus tagERS852580_00176Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXM01000001.1Sequence record reported by the local genomic context database.
Genomic interval173 821-175 260 nt1 440 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span173 821-175 965 ntGCF_001406375::NZ_CYXM01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406375::NZ_CYXM01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span173 821-175 965 nt2 145 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
173 821 nt175 965 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA17_RS00830GCF_001406375#ARA17_RS00830
HKClassicCurrent focus
173 821-175 260 nt · Reverse (-)
ARA17_RS00835GCF_001406375#ARA17_RS00835
RROmpR
175 264-175 965 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406375#ARA17_RS00830The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1629148
Simplified PFAM architecture for HKOC_1629148
PFAM domain coverage: 224 / 479 aa (46.8%)
1 aa479 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[197-247] | HisKA[253-314] | HATPase_c[365-475]
- Domain count: 3
- Matched identifier: HKOC_1629148
- Positioned domains: HAMP 197-247 ; HisKA 253-314 ; HATPase_c 365-475
Cluster members and taxonomy
Representative gene: GCF_001406375#ARA17_RS00830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001406375
Assembly14207_7#91 · Scaffoldhaploid
Genome composition3 708 874 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 39 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key