1 Response_reg#1
4-116 aa · 113 aa · 50.9% of protein
Raw token
Response_reg:4:1.65e-32:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA17_RS00705
Response regulator OmpR family
Agathobacter rectalis · GCF_001406375
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406375#ARA17_RS00705Stable P2CS identifier used across views.
GenomeGCF_001406375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 222 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.3% of protein
Raw token
Trans_reg_C:148:7.13e-29:221:77:77- Raw architecture: Response_reg:4:1.65e-32:116:113:111#Trans_reg_C:148:7.13e-29:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406375::NZ_CYXM01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144146-146182Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852580_00150RefSeq proteinWP_055236717.1
Context group ID
GCF_001406375::NZ_CYXM01000001.1::G00003Context members
ARA17_RS00705ARA17_RS00710
Partner locus tags
ARA17_RS00705ARA17_RS00710
Partner old locus tags
ERS852580_00150ERS852580_00151
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055236717.1Primary protein accession used for annex mappings.
UniProt accessionA0A173QYI6Primary UniProt accession resolved in the annex database.
UniProt IDA0A173QYI6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA17_RS00705Primary locus identifier stored in the genes table.
Old locus tagERS852580_00150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXM01000001.1Sequence record reported by the local genomic context database.
Genomic interval144 146-144 814 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span144 146-146 182 ntGCF_001406375::NZ_CYXM01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406375::NZ_CYXM01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span144 146-146 182 nt2 037 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 146 nt146 182 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA17_RS00705GCF_001406375#ARA17_RS00705
RROmpRCurrent focus
144 146-144 814 nt · Forward (+)
ARA17_RS00710GCF_001406375#ARA17_RS00710
HKClassic
144 860-146 182 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406375#ARA17_RS00705The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1641700
Simplified PFAM architecture for RROC_1641700
PFAM domain coverage: 185 / 222 aa (83.3%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-116] | Trans_reg_C[149-220]
- Domain count: 2
- Matched identifier: RROC_1641700
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; Trans_reg_C 149-220 ; Trans_reg_C 149-220
Cluster members and taxonomy
Representative gene: GCF_001406375#ARA17_RS00705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001406375
Assembly14207_7#91 · Scaffoldhaploid
Genome composition3 708 874 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 39 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key