1 HisKA#1
584-649 aa · 66 aa · 8.3% of protein
Raw token
HisKA:584:1.07e-18:649:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA17_RS00670
Histidine kinase, Classic
Agathobacter rectalis · GCF_001406375
ClassHKTypeClassicLength800 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406375#ARA17_RS00670Stable P2CS identifier used across views.
GenomeGCF_001406375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length800 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 800 aa (20.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa800 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
695-788 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:695:0.00000000000385:788:100:109- Raw architecture: HisKA:584:1.07e-18:649:66:64#HATPase_c:695:0.00000000000385:788:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406375::NZ_CYXM01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span134925-138074Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852580_00142RefSeq proteinWP_055236707.1
Context group ID
GCF_001406375::NZ_CYXM01000001.1::G00002Context members
ARA17_RS00665ARA17_RS00670
Partner locus tags
ARA17_RS00665ARA17_RS00670
Partner old locus tags
ERS852580_00141ERS852580_00142
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055236707.1Primary protein accession used for annex mappings.
UniProt accessionA0A173QYC3Primary UniProt accession resolved in the annex database.
UniProt IDA0A173QYC3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA17_RS00670Primary locus identifier stored in the genes table.
Old locus tagERS852580_00142Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXM01000001.1Sequence record reported by the local genomic context database.
Genomic interval135 672-138 074 nt2 403 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span134 925-138 074 ntGCF_001406375::NZ_CYXM01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406375::NZ_CYXM01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span134 925-138 074 nt3 150 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
134 925 nt138 074 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA17_RS00665GCF_001406375#ARA17_RS00665
RROmpR
134 925-135 614 nt · Forward (+)
ARA17_RS00670GCF_001406375#ARA17_RS00670
HKClassicCurrent focus
135 672-138 074 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406375#ARA17_RS00670The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0556310
Simplified PFAM architecture for HKOC_0556310
PFAM domain coverage: 164 / 800 aa (20.5%)
1 aa800 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[584-648] | HATPase_c[696-794]
- Domain count: 2
- Matched identifier: HKOC_0556310
- Positioned domains: HisKA 584-648 ; HATPase_c 696-794
Cluster members and taxonomy
Representative gene: GCF_001406375#ARA17_RS00670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001406375
Assembly14207_7#91 · Scaffoldhaploid
Genome composition3 708 874 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 39 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key