1 Response_reg#1
4-119 aa · 116 aa · 46.4% of protein
Raw token
Response_reg:4:0.0000000000000198:119:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS12750
Response regulator LytTR family
Hungatella hathewayi · GCF_001405995
ClassRRTypeLytTRLength250 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405995#ARA93_RS12750Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage212 / 250 aa (84.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-244 aa · 96 aa · 38.4% of protein
Raw token
LytTR:149:0.000000000000406:244:100:98- Raw architecture: Response_reg:4:0.0000000000000198:119:116:111#LytTR:149:0.000000000000406:244:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405995::NZ_CZAZ01000012.1::G00053
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span62164-62916Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_02597RefSeq proteinWP_055650411.1
Context group ID
GCF_001405995::NZ_CZAZ01000012.1::G00053Context members
ARA93_RS12750
Partner locus tags
ARA93_RS12750
Partner old locus tags
ERS852528_02597
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055650411.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WHD5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WHD5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS12750Primary locus identifier stored in the genes table.
Old locus tagERS852528_02597Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000012.1Sequence record reported by the local genomic context database.
Genomic interval62 164-62 916 nt753 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 164-62 916 ntGCF_001405995::NZ_CZAZ01000012.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000012.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000012.1All displayed genes belong to this local TCS context.
Neighborhood span62 164-62 916 nt753 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 164 nt62 916 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA93_RS12750GCF_001405995#ARA93_RS12750
RRLytTRCurrent focus
62 164-62 916 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS12750The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0722974
Simplified PFAM architecture for RROC_0722974
PFAM domain coverage: 208 / 250 aa (83.2%)
1 aa250 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-118] | LytTR[151-243]
- Domain count: 2
- Matched identifier: RROC_0722974
- Positioned domains: Response_reg 4-118 ; Response_reg 4-118 ; LytTR 151-243 ; LytTR 151-243
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS12750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key