1 HisKA#1
432-500 aa · 69 aa · 10.3% of protein
Raw token
HisKA:432:0.000000000000313:500:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS01280
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405995
ClassHKTypeClassicLength672 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS01280Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 672 aa (26.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa672 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
546-656 aa · 111 aa · 16.5% of protein
Raw token
HATPase_c:546:2.3e-29:656:111:109- Raw architecture: HisKA:432:0.000000000000313:500:69:64#HATPase_c:546:2.3e-29:656:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span258457-261152Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_00253RefSeq proteinWP_055648948.1
Context group ID
GCF_001405995::NZ_CZAZ01000001.1::G00005Context members
ARA93_RS01280ARA93_RS01285
Partner locus tags
ARA93_RS01280ARA93_RS01285
Partner old locus tags
ERS852528_00253ERS852528_00254
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055648948.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WD60Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WD60_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS01280Primary locus identifier stored in the genes table.
Old locus tagERS852528_00253Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval258 457-260 475 nt2 019 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span258 457-261 152 ntGCF_001405995::NZ_CZAZ01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span258 457-261 152 nt2 696 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
258 457 nt261 152 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS01280GCF_001405995#ARA93_RS01280
HKClassicCurrent focus
258 457-260 475 nt · Reverse (-)
ARA93_RS01285GCF_001405995#ARA93_RS01285
RROmpR
260 472-261 152 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS01280The current gene is the representative for this cluster.
PFAM architecture7TMR-DISM_7TM + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0839238
Simplified PFAM architecture for HKOC_0839238
PFAM domain coverage: 338 / 672 aa (50.3%)
1 aa672 aa
7TMR-DISM_7TMHisKAHATPase_c
- Simplified architecture: 7TMR-DISM_7TM + HisKA + HATPase_c
- Raw architecture: 7TMR-DISM_7TM[203-362] | HisKA[433-500] | HATPase_c[546-655]
- Domain count: 3
- Matched identifier: HKOC_0839238
- Positioned domains: 7TMR-DISM_7TM 203-362 ; HisKA 433-500 ; HATPase_c 546-655
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS01280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key