1 Response_reg#1
5-117 aa · 113 aa · 27.0% of protein
Raw token
Response_reg:5:4.14e-30:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS03580
Response regulator, unclassified
Hungatella hathewayi · GCF_001405995
ClassRRTypeunclassifiedLength418 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS03580Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 418 aa (44.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
333-367 aa · 35 aa · 8.4% of protein
Raw token
HTH_AraC:333:0.0000516:367:35:423 HTH_AraC#3
380-415 aa · 36 aa · 8.6% of protein
Raw token
HTH_AraC:380:0.0000000691:415:36:42- Raw architecture: Response_reg:5:4.14e-30:117:113:111#HTH_AraC:333:0.0000516:367:35:42#HTH_AraC:380:0.0000000691:415:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000003.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33810-36870Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_00719RefSeq proteinWP_055649253.1
Context group ID
GCF_001405995::NZ_CZAZ01000003.1::G00013Context members
ARA93_RS03575ARA93_RS03580
Partner locus tags
ARA93_RS03575ARA93_RS03580
Partner old locus tags
ERS852528_00718ERS852528_00719
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055649253.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS03580Primary locus identifier stored in the genes table.
Old locus tagERS852528_00719Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000003.1Sequence record reported by the local genomic context database.
Genomic interval35 614-36 870 nt1 257 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 810-36 870 ntGCF_001405995::NZ_CZAZ01000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span33 810-36 870 nt3 061 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 810 nt36 870 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS03575GCF_001405995#ARA93_RS03575
HKClassic
33 810-35 636 nt · Forward (+)
ARA93_RS03580GCF_001405995#ARA93_RS03580
RRunclassifiedCurrent focus
35 614-36 870 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS03580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0357746
Simplified PFAM architecture for RROC_0357746
PFAM domain coverage: 192 / 418 aa (45.9%)
1 aa418 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[339-417]
- Domain count: 2
- Matched identifier: RROC_0357746
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HTH_18 339-417 ; HTH_18 339-417
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS03580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key