1 HAMP#1
305-373 aa · 69 aa · 11.3% of protein
Raw token
HAMP:305:0.00000433:373:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS03575
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405995
ClassHKTypeClassicLength608 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS03575Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length608 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 608 aa (42.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa608 aa
Domain-by-domain annotation3 items
2 His_kinase#2
389-468 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:389:2.13e-26:468:80:803 HATPase_c#3
488-594 aa · 107 aa · 17.6% of protein
Raw token
HATPase_c:488:0.000000000408:594:111:109- Raw architecture: HAMP:305:0.00000433:373:70:69#His_kinase:389:2.13e-26:468:80:80#HATPase_c:488:0.000000000408:594:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000003.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33810-36870Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_00718RefSeq proteinWP_055649252.1
Context group ID
GCF_001405995::NZ_CZAZ01000003.1::G00013Context members
ARA93_RS03575ARA93_RS03580
Partner locus tags
ARA93_RS03575ARA93_RS03580
Partner old locus tags
ERS852528_00718ERS852528_00719
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055649252.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WG73Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WG73_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS03575Primary locus identifier stored in the genes table.
Old locus tagERS852528_00718Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000003.1Sequence record reported by the local genomic context database.
Genomic interval33 810-35 636 nt1 827 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 810-36 870 ntGCF_001405995::NZ_CZAZ01000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span33 810-36 870 nt3 061 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 810 nt36 870 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS03575GCF_001405995#ARA93_RS03575
HKClassicCurrent focus
33 810-35 636 nt · Forward (+)
ARA93_RS03580GCF_001405995#ARA93_RS03580
RRunclassified
35 614-36 870 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS03575The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1013657
Simplified PFAM architecture for HKOC_1013657
PFAM domain coverage: 185 / 608 aa (30.4%)
1 aa608 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[389-467] | HATPase_c[488-593]
- Domain count: 2
- Matched identifier: HKOC_1013657
- Positioned domains: His_kinase 389-467 ; HATPase_c 488-593
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS03575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key