1 sCache_like#1
62-131 aa · 70 aa · 15.2% of protein
Raw token
sCache_like:62:0.0000206:131:70:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS00020
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405995
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS00020Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 462 aa (53.2%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HisKA#2
242-307 aa · 66 aa · 14.3% of protein
Raw token
HisKA:242:9.24e-18:307:66:643 HATPase_c#3
352-461 aa · 110 aa · 23.8% of protein
Raw token
HATPase_c:352:8.1e-34:461:110:109- Raw architecture: sCache_like:62:0.0000206:131:70:114#HisKA:242:9.24e-18:307:66:64#HATPase_c:352:8.1e-34:461:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2953-5035Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_00004RefSeq proteinWP_006775247.1
Context group ID
GCF_001405995::NZ_CZAZ01000001.1::G00001Context members
ARA93_RS00015ARA93_RS00020
Partner locus tags
ARA93_RS00015ARA93_RS00020
Partner old locus tags
ERS852528_00003ERS852528_00004
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006775247.1Primary protein accession used for annex mappings.
UniProt accessionD3AMG7Primary UniProt accession resolved in the annex database.
UniProt IDD3AMG7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS00020Primary locus identifier stored in the genes table.
Old locus tagERS852528_00004Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval3 647-5 035 nt1 389 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 953-5 035 ntGCF_001405995::NZ_CZAZ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 953-5 035 nt2 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 953 nt5 035 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS00015GCF_001405995#ARA93_RS00015
RROmpR
2 953-3 645 nt · Forward (+)
ARA93_RS00020GCF_001405995#ARA93_RS00020
HKClassicCurrent focus
3 647-5 035 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS21350Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1807491
Simplified PFAM architecture for HKOC_1807491
PFAM domain coverage: 174 / 462 aa (37.7%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[242-307] | HATPase_c[354-461]
- Domain count: 2
- Matched identifier: HKOC_1807491
- Positioned domains: HisKA 242-307 ; HATPase_c 354-461
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS21350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key