1 HAMP#1
311-375 aa · 65 aa · 10.6% of protein
Raw token
HAMP:311:0.000000185:375:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA98_RS28175
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405675
ClassHKTypeClassicLength612 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405675#ARA98_RS28175Stable P2CS identifier used across views.
GenomeGCF_001405675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length612 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 612 aa (41.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa612 aa
Domain-by-domain annotation3 items
2 His_kinase#2
391-468 aa · 78 aa · 12.7% of protein
Raw token
His_kinase:391:7.3e-28:468:78:803 HATPase_c#3
485-592 aa · 108 aa · 17.6% of protein
Raw token
HATPase_c:485:0.000000000000196:592:109:109- Raw architecture: HAMP:311:0.000000185:375:65:69#His_kinase:391:7.3e-28:468:78:80#HATPase_c:485:0.000000000000196:592:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405675::NZ_CYZE01000026.1::G00146
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14506-17554Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852407_05676RefSeq proteinWP_025531038.1
Context group ID
GCF_001405675::NZ_CYZE01000026.1::G00146Context members
ARA98_RS28170ARA98_RS28175
Partner locus tags
ARA98_RS28170ARA98_RS28175
Partner old locus tags
ERS852407_05675ERS852407_05676
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025531038.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA98_RS28175Primary locus identifier stored in the genes table.
Old locus tagERS852407_05676Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZE01000026.1Sequence record reported by the local genomic context database.
Genomic interval15 716-17 554 nt1 839 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 506-17 554 ntGCF_001405675::NZ_CYZE01000026.1::G00146
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405675::NZ_CYZE01000026.1::G00146Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZE01000026.1All displayed genes belong to this local TCS context.
Neighborhood span14 506-17 554 nt3 049 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 506 nt17 554 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA98_RS28170GCF_001405675#ARA98_RS28170
RRunclassified
14 506-15 684 nt · Reverse (-)
ARA98_RS28175GCF_001405675#ARA98_RS28175
HKClassicCurrent focus
15 716-17 554 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405675#ARA98_RS28175The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0997585
Simplified PFAM architecture for HKOC_0997585
PFAM domain coverage: 237 / 612 aa (38.7%)
1 aa612 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[326-374] | His_kinase[391-468] | HATPase_c[485-594]
- Domain count: 3
- Matched identifier: HKOC_0997585
- Positioned domains: HAMP 326-374 ; His_kinase 391-468 ; HATPase_c 485-594
Cluster members and taxonomy
Representative gene: GCF_001405675#ARA98_RS28175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405675
Assembly13414_6#34 · Scaffoldhaploid
Genome composition6 979 496 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 277 · HK 136 · RR 137CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key