1 Response_reg#1
6-118 aa · 113 aa · 21.3% of protein
Raw token
Response_reg:6:6.13e-27:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA98_RS00955
Response regulator, unclassified
Hungatella hathewayi · GCF_001405675
ClassRRTypeunclassifiedLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405675#ARA98_RS00955Stable P2CS identifier used across views.
GenomeGCF_001405675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 530 aa (28.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
491-527 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:491:0.0000000945:527:37:42- Raw architecture: Response_reg:6:6.13e-27:118:113:111#HTH_AraC:491:0.0000000945:527:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405675::NZ_CYZE01000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span215922-219340Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852407_00193RefSeq proteinWP_055652641.1
Context group ID
GCF_001405675::NZ_CYZE01000001.1::G00008Context members
ARA98_RS00955ARA98_RS00960
Partner locus tags
ARA98_RS00955ARA98_RS00960
Partner old locus tags
ERS852407_00193ERS852407_00194
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055652641.1Primary protein accession used for annex mappings.
UniProt accessionA0A173WZV2Primary UniProt accession resolved in the annex database.
UniProt IDA0A173WZV2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA98_RS00955Primary locus identifier stored in the genes table.
Old locus tagERS852407_00193Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZE01000001.1Sequence record reported by the local genomic context database.
Genomic interval215 922-217 514 nt1 593 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span215 922-219 340 ntGCF_001405675::NZ_CYZE01000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405675::NZ_CYZE01000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span215 922-219 340 nt3 419 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
215 922 nt219 340 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA98_RS00955GCF_001405675#ARA98_RS00955
RRunclassifiedCurrent focus
215 922-217 514 nt · Reverse (-)
ARA98_RS00960GCF_001405675#ARA98_RS00960
HKClassic
217 526-219 340 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405675#ARA98_RS00955The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0111583
Simplified PFAM architecture for RROC_0111583
PFAM domain coverage: 260 / 530 aa (49.1%)
1 aa530 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-117] | GGDEF_2[221-289] | HTH_18[449-527]
- Domain count: 3
- Matched identifier: RROC_0111583
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GGDEF_2 221-289 ; GGDEF_2 221-289 ; HTH_18 449-527 ; HTH_18 449-527
Cluster members and taxonomy
Representative gene: GCF_001405675#ARA98_RS00955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405675
Assembly13414_6#34 · Scaffoldhaploid
Genome composition6 979 496 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 277 · HK 136 · RR 137CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key