1 Response_reg#1
3-109 aa · 107 aa · 46.7% of protein
Raw token
Response_reg:3:4.47e-28:109:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA98_RS11405
Response regulator OmpR family
Hungatella hathewayi · GCF_001405675
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405675#ARA98_RS11405Stable P2CS identifier used across views.
GenomeGCF_001405675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 229 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 32.8% of protein
Raw token
Trans_reg_C:145:3.57e-22:219:76:77- Raw architecture: Response_reg:3:4.47e-28:109:108:111#Trans_reg_C:145:3.57e-22:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405675::NZ_CYZE01000005.1::G00065
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47439-49342Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852407_02291RefSeq proteinWP_025529362.1
Context group ID
GCF_001405675::NZ_CYZE01000005.1::G00065Context members
ARA98_RS11400ARA98_RS11405
Partner locus tags
ARA98_RS11400ARA98_RS11405
Partner old locus tags
ERS852407_02290ERS852407_02291
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025529362.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DR14Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DR14_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA98_RS11405Primary locus identifier stored in the genes table.
Old locus tagERS852407_02291Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZE01000005.1Sequence record reported by the local genomic context database.
Genomic interval48 653-49 342 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 439-49 342 ntGCF_001405675::NZ_CYZE01000005.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405675::NZ_CYZE01000005.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZE01000005.1All displayed genes belong to this local TCS context.
Neighborhood span47 439-49 342 nt1 904 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 439 nt49 342 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA98_RS11400GCF_001405675#ARA98_RS11400
HKClassic
47 439-48 656 nt · Reverse (-)
ARA98_RS11405GCF_001405675#ARA98_RS11405
RROmpRCurrent focus
48 653-49 342 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405675#ARA98_RS11405The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253472
Simplified PFAM architecture for RROC_1253472
PFAM domain coverage: 183 / 229 aa (79.9%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1253472
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_001405675#ARA98_RS11405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405675
Assembly13414_6#34 · Scaffoldhaploid
Genome composition6 979 496 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 277 · HK 136 · RR 137CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key