1 Response_reg#1
9-118 aa · 110 aa · 45.5% of protein
Raw token
Response_reg:9:4.58e-18:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB75_RS09370
Response regulator LytTR family
Roseburia faecis · GCF_001405615
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405615#ARB75_RS09370Stable P2CS identifier used across views.
GenomeGCF_001405615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 242 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
142-231 aa · 90 aa · 37.2% of protein
Raw token
LytTR:142:5.34e-17:231:96:98- Raw architecture: Response_reg:9:4.58e-18:118:115:111#LytTR:142:5.34e-17:231:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405615::NZ_CYXV01000007.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span120958-121686Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852420_01905RefSeq proteinWP_055066775.1
Context group ID
GCF_001405615::NZ_CYXV01000007.1::G00029Context members
ARB75_RS09370
Partner locus tags
ARB75_RS09370
Partner old locus tags
ERS852420_01905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055066775.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WC81Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WC81_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB75_RS09370Primary locus identifier stored in the genes table.
Old locus tagERS852420_01905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXV01000007.1Sequence record reported by the local genomic context database.
Genomic interval120 958-121 686 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span120 958-121 686 ntGCF_001405615::NZ_CYXV01000007.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405615::NZ_CYXV01000007.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXV01000007.1All displayed genes belong to this local TCS context.
Neighborhood span120 958-121 686 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 958 nt121 686 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARB75_RS09370GCF_001405615#ARB75_RS09370
RRLytTRCurrent focus
120 958-121 686 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS09370The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0845830
Simplified PFAM architecture for RROC_0845830
PFAM domain coverage: 202 / 242 aa (83.5%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[9-119] | LytTR[143-233]
- Domain count: 2
- Matched identifier: RROC_0845830
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; LytTR 143-233 ; LytTR 143-233
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS09370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001405615
Assembly13414_6#47 · Scaffoldreference genome · haploid
Genome composition3 567 818 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 100 · HK 42 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key