1 Response_reg#1
5-114 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:5:2.65e-31:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB75_RS00245
Response regulator OmpR family
Roseburia faecis · GCF_001405615
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405615#ARB75_RS00245Stable P2CS identifier used across views.
GenomeGCF_001405615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 221 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 34.4% of protein
Raw token
Trans_reg_C:144:6.05e-25:219:78:77- Raw architecture: Response_reg:5:2.65e-31:114:111:111#Trans_reg_C:144:6.05e-25:219:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405615::NZ_CYXV01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52326-54266Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852420_00051RefSeq proteinWP_055261080.1
Context group ID
GCF_001405615::NZ_CYXV01000001.1::G00001Context members
ARB75_RS00240ARB75_RS00245
Partner locus tags
ARB75_RS00240ARB75_RS00245
Partner old locus tags
ERS852420_00050ERS852420_00051
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055261080.1Primary protein accession used for annex mappings.
UniProt accessionA0A173QV08Primary UniProt accession resolved in the annex database.
UniProt IDA0A173QV08_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB75_RS00245Primary locus identifier stored in the genes table.
Old locus tagERS852420_00051Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXV01000001.1Sequence record reported by the local genomic context database.
Genomic interval53 601-54 266 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 326-54 266 ntGCF_001405615::NZ_CYXV01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405615::NZ_CYXV01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span52 326-54 266 nt1 941 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 326 nt54 266 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB75_RS00240GCF_001405615#ARB75_RS00240
HKClassic
52 326-53 591 nt · Reverse (-)
ARB75_RS00245GCF_001405615#ARB75_RS00245
RROmpRCurrent focus
53 601-54 266 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS00245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1681984
Simplified PFAM architecture for RROC_1681984
PFAM domain coverage: 186 / 221 aa (84.2%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1681984
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS00245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001405615
Assembly13414_6#47 · Scaffoldreference genome · haploid
Genome composition3 567 818 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 100 · HK 42 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key