1 Response_reg#1
43-159 aa · 117 aa · 68.4% of protein
Raw token
Response_reg:43:2.14e-29:159:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS08435
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_001405555
ClassRRTypeCheYLength171 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405555#ARB84_RS08435Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length171 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage117 / 171 aa (68.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa171 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:43:2.14e-29:159:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405555::NZ_CYYV01000007.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span220763-223559Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852406_01718RefSeq proteinWP_156327566.1
Context group ID
GCF_001405555::NZ_CYYV01000007.1::G00026Context members
ARB84_RS08425ARB84_RS08435
Partner locus tags
ARB84_RS08425ARB84_RS08435
Partner old locus tags
ERS852406_01716ERS852406_01718
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_156327566.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS08435Primary locus identifier stored in the genes table.
Old locus tagERS852406_01718Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYV01000007.1Sequence record reported by the local genomic context database.
Genomic interval223 043-223 559 nt517 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span220 763-223 559 ntGCF_001405555::NZ_CYYV01000007.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000007.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000007.1All displayed genes belong to this local TCS context.
Neighborhood span220 763-223 559 nt2 797 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
220 763 nt223 559 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB84_RS08425GCF_001405555#ARB84_RS08425
HKHybrid
220 763-222 706 nt · Reverse (-)
ARB84_RS08435GCF_001405555#ARB84_RS08435
RRCheYCurrent focus
223 043-223 559 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS08435The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2197049
Simplified PFAM architecture for RROC_2197049
PFAM domain coverage: 117 / 171 aa (68.4%)
1 aa171 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[43-159]
- Domain count: 1
- Matched identifier: RROC_2197049
- Positioned domains: Response_reg 43-159 ; Response_reg 43-159
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS08435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key