1 Response_reg#1
1-99 aa · 99 aa · 97.1% of protein
Raw token
Response_reg:1:2.15e-23:99:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS00920
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_001405555
ClassRRTypeCheYLength102 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405555#ARB84_RS00920Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length102 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage99 / 102 aa (97.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa102 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:2.15e-23:99:99:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405555::NZ_CYYV01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span201059-201367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852406_00188RefSeq proteinWP_082424835.1
Context group ID
GCF_001405555::NZ_CYYV01000001.1::G00004Context members
ARB84_RS00920
Partner locus tags
ARB84_RS00920
Partner old locus tags
ERS852406_00188
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_082424835.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2GG28Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2GG28_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS00920Primary locus identifier stored in the genes table.
Old locus tagERS852406_00188Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYV01000001.1Sequence record reported by the local genomic context database.
Genomic interval201 059-201 367 nt309 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span201 059-201 367 ntGCF_001405555::NZ_CYYV01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span201 059-201 367 nt309 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
201 059 nt201 367 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARB84_RS00920GCF_001405555#ARB84_RS00920
RRCheYCurrent focus
201 059-201 367 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS00920The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2471219
Simplified PFAM architecture for RROC_2471219
PFAM domain coverage: 98 / 102 aa (96.1%)
1 aa102 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-99]
- Domain count: 1
- Matched identifier: RROC_2471219
- Positioned domains: Response_reg 2-99 ; Response_reg 2-99
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS00920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key