1 Response_reg#1
4-116 aa · 113 aa · 21.9% of protein
Raw token
Response_reg:4:5.79e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS04115
Response regulator, unclassified
[Ruminococcus] torques · GCF_001405235
ClassRRTypeunclassifiedLength516 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS04115Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length516 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 516 aa (37.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa516 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
420-462 aa · 43 aa · 8.3% of protein
Raw token
HTH_AraC:420:0.00000466:462:43:423 HTH_AraC#3
477-511 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:477:0.00000245:511:35:42- Raw architecture: Response_reg:4:5.79e-28:116:113:111#HTH_AraC:420:0.00000466:462:43:42#HTH_AraC:477:0.00000245:511:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000003.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59679-63068Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_00839RefSeq proteinWP_055146023.1
Context group ID
GCF_001405235::NZ_CZBS01000003.1::G00009Context members
ARA40_RS04115ARA40_RS04120
Partner locus tags
ARA40_RS04115ARA40_RS04120
Partner old locus tags
ERS852424_00839ERS852424_00840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055146023.1Primary protein accession used for annex mappings.
UniProt accessionA0A174ZRR5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174ZRR5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS04115Primary locus identifier stored in the genes table.
Old locus tagERS852424_00839Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000003.1Sequence record reported by the local genomic context database.
Genomic interval59 679-61 229 nt1 551 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 679-63 068 ntGCF_001405235::NZ_CZBS01000003.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000003.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span59 679-63 068 nt3 390 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 679 nt63 068 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS04115GCF_001405235#ARA40_RS04115
RRunclassifiedCurrent focus
59 679-61 229 nt · Forward (+)
ARA40_RS04120GCF_001405235#ARA40_RS04120
HKClassic
61 248-63 068 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS04115The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0134313
Simplified PFAM architecture for RROC_0134313
PFAM domain coverage: 188 / 516 aa (36.4%)
1 aa516 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[437-512]
- Domain count: 2
- Matched identifier: RROC_0134313
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 437-512 ; HTH_18 437-512
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS04115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key