1 HisKA#1
35-90 aa · 56 aa · 22.7% of protein
Raw token
HisKA:35:0.00000358:90:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS01975
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405235
ClassHKTypeClassicLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405235#ARA40_RS01975Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 247 aa (66.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
140-246 aa · 107 aa · 43.3% of protein
Raw token
HATPase_c:140:1.76e-30:246:110:109- Raw architecture: HisKA:35:0.00000358:90:56:64#HATPase_c:140:1.76e-30:246:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405235::NZ_CZBS01000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span427803-428546Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_00397RefSeq proteinWP_055145132.1
Context group ID
GCF_001405235::NZ_CZBS01000001.1::G00002Context members
ARA40_RS01975
Partner locus tags
ARA40_RS01975
Partner old locus tags
ERS852424_00397
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055145132.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS01975Primary locus identifier stored in the genes table.
Old locus tagERS852424_00397Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000001.1Sequence record reported by the local genomic context database.
Genomic interval427 803-428 546 nt744 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span427 803-428 546 ntGCF_001405235::NZ_CZBS01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000001.1All displayed genes belong to this local TCS context.
Neighborhood span427 803-428 546 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
427 803 nt428 546 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA40_RS01975GCF_001405235#ARA40_RS01975
HKClassicCurrent focus
427 803-428 546 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS01975The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2920195
Simplified PFAM architecture for HKOC_2920195
PFAM domain coverage: 107 / 247 aa (43.3%)
1 aa247 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[140-246]
- Domain count: 1
- Matched identifier: HKOC_2920195
- Positioned domains: HATPase_c 140-246
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS01975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key