1 Response_reg#1
4-117 aa · 114 aa · 21.2% of protein
Raw token
Response_reg:4:6.51e-27:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA06_RS08005
Response regulator, unclassified
Blautia obeum · GCF_001405215
ClassRRTypeunclassifiedLength539 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405215#ARA06_RS08005Stable P2CS identifier used across views.
GenomeGCF_001405215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length539 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 539 aa (28.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa539 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
443-484 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:443:0.00000221:484:42:42- Raw architecture: Response_reg:4:6.51e-27:117:114:111#HTH_AraC:443:0.00000221:484:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405215::NZ_CZBA01000008.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41372-44775Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852533_01635RefSeq proteinWP_055055977.1
Context group ID
GCF_001405215::NZ_CZBA01000008.1::G00028Context members
ARA06_RS08000ARA06_RS08005
Partner locus tags
ARA06_RS08000ARA06_RS08005
Partner old locus tags
ERS852533_01634ERS852533_01635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055977.1Primary protein accession used for annex mappings.
UniProt accessionA0A174P0J1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174P0J1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA06_RS08005Primary locus identifier stored in the genes table.
Old locus tagERS852533_01635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBA01000008.1Sequence record reported by the local genomic context database.
Genomic interval43 156-44 775 nt1 620 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 372-44 775 ntGCF_001405215::NZ_CZBA01000008.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405215::NZ_CZBA01000008.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBA01000008.1All displayed genes belong to this local TCS context.
Neighborhood span41 372-44 775 nt3 404 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 372 nt44 775 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA06_RS08000GCF_001405215#ARA06_RS08000
HKClassic
41 372-43 159 nt · Reverse (-)
ARA06_RS08005GCF_001405215#ARA06_RS08005
RRunclassifiedCurrent focus
43 156-44 775 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS08005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0091750
Simplified PFAM architecture for RROC_0091750
PFAM domain coverage: 324 / 539 aa (60.1%)
1 aa539 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[168-300] | HTH_18[458-535]
- Domain count: 3
- Matched identifier: RROC_0091750
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 168-300 ; GGDEF_2 168-300 ; HTH_18 458-535 ; HTH_18 458-535
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS08005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405215
Assembly14207_7#44 · Scaffoldhaploid
Genome composition3 904 077 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 114 · HK 60 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key