1 Response_reg#1
4-112 aa · 109 aa · 47.2% of protein
Raw token
Response_reg:4:6.76e-38:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA06_RS00040
Response regulator OmpR family
Blautia obeum · GCF_001405215
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405215#ARA06_RS00040Stable P2CS identifier used across views.
GenomeGCF_001405215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 231 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-227 aa · 73 aa · 31.6% of protein
Raw token
Trans_reg_C:155:4.99e-32:227:73:77- Raw architecture: Response_reg:4:6.76e-38:112:110:111#Trans_reg_C:155:4.99e-32:227:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405215::NZ_CZBA01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8672-10290Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852533_00008RefSeq proteinWP_055055120.1
Context group ID
GCF_001405215::NZ_CZBA01000001.1::G00002Context members
ARA06_RS00040ARA06_RS00045
Partner locus tags
ARA06_RS00040ARA06_RS00045
Partner old locus tags
ERS852533_00008ERS852533_00009
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055120.1Primary protein accession used for annex mappings.
UniProt accessionA0A174JX62Primary UniProt accession resolved in the annex database.
UniProt IDA0A174JX62_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA06_RS00040Primary locus identifier stored in the genes table.
Old locus tagERS852533_00008Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBA01000001.1Sequence record reported by the local genomic context database.
Genomic interval8 672-9 367 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 672-10 290 ntGCF_001405215::NZ_CZBA01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405215::NZ_CZBA01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBA01000001.1All displayed genes belong to this local TCS context.
Neighborhood span8 672-10 290 nt1 619 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 672 nt10 290 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA06_RS00040GCF_001405215#ARA06_RS00040
RROmpRCurrent focus
8 672-9 367 nt · Forward (+)
ARA06_RS00045GCF_001405215#ARA06_RS00045
HKClassic
9 373-10 290 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404875#ARA07_RS15630Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1162805
Simplified PFAM architecture for RROC_1162805
PFAM domain coverage: 183 / 231 aa (79.2%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[154-227]
- Domain count: 2
- Matched identifier: RROC_1162805
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 154-227 ; Trans_reg_C 154-227
Cluster members and taxonomy
Representative gene: GCF_001404875#ARA07_RS15630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405215
Assembly14207_7#44 · Scaffoldhaploid
Genome composition3 904 077 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 114 · HK 60 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key