1 Response_reg#1
4-115 aa · 112 aa · 28.6% of protein
Raw token
Response_reg:4:2.87e-31:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA06_RS00535
Response regulator, unclassified
Blautia obeum · GCF_001405215
ClassRRTypeunclassifiedLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405215#ARA06_RS00535Stable P2CS identifier used across views.
GenomeGCF_001405215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 392 aa (48.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
297-338 aa · 42 aa · 10.7% of protein
Raw token
HTH_AraC:297:0.000000000207:338:42:423 HTH_AraC#3
351-386 aa · 36 aa · 9.2% of protein
Raw token
HTH_AraC:351:0.0000000972:386:36:42- Raw architecture: Response_reg:4:2.87e-31:115:112:111#HTH_AraC:297:0.000000000207:338:42:42#HTH_AraC:351:0.0000000972:386:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405215::NZ_CZBA01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120165-123152Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852533_00108RefSeq proteinWP_055055160.1
Context group ID
GCF_001405215::NZ_CZBA01000001.1::G00004Context members
ARA06_RS00535ARA06_RS00540
Partner locus tags
ARA06_RS00535ARA06_RS00540
Partner old locus tags
ERS852533_00108ERS852533_00109
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055160.1Primary protein accession used for annex mappings.
UniProt accessionA0A174K3D0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174K3D0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA06_RS00535Primary locus identifier stored in the genes table.
Old locus tagERS852533_00108Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBA01000001.1Sequence record reported by the local genomic context database.
Genomic interval120 165-121 343 nt1 179 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span120 165-123 152 ntGCF_001405215::NZ_CZBA01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405215::NZ_CZBA01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBA01000001.1All displayed genes belong to this local TCS context.
Neighborhood span120 165-123 152 nt2 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 165 nt123 152 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA06_RS00535GCF_001405215#ARA06_RS00535
RRunclassifiedCurrent focus
120 165-121 343 nt · Reverse (-)
ARA06_RS00540GCF_001405215#ARA06_RS00540
HKClassic
121 368-123 152 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS00535The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0402358
Simplified PFAM architecture for RROC_0402358
PFAM domain coverage: 190 / 392 aa (48.5%)
1 aa392 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-115] | HTH_AraC[297-338] | HTH_AraC[351-386]
- Domain count: 3
- Matched identifier: RROC_0402358
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_AraC 297-338 ; HTH_AraC 297-338 ; HTH_AraC 351-386 ; HTH_AraC 351-386
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS00535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405215
Assembly14207_7#44 · Scaffoldhaploid
Genome composition3 904 077 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 114 · HK 60 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key