1 GGDEF#1
136-277 aa · 142 aa · 20.1% of protein
Raw token
GGDEF:136:9.85e-40:277:153:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA06_RS07605
Response regulator, RpfG family
Blautia obeum · GCF_001405215
ClassRRTypeRpfGLength708 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405215#ARA06_RS07605Stable P2CS identifier used across views.
GenomeGCF_001405215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length708 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage389 / 708 aa (54.9%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa708 aa
Domain-by-domain annotation3 items
2 Response_reg#2
308-420 aa · 113 aa · 16.0% of protein
Raw token
Response_reg:308:3.47e-26:420:114:1113 HD#3
468-601 aa · 134 aa · 18.9% of protein
Raw token
HD:468:0.00000000000000956:601:134:110- Raw architecture: GGDEF:136:9.85e-40:277:153:160#Response_reg:308:3.47e-26:420:114:111#HD:468:0.00000000000000956:601:134:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405215::NZ_CZBA01000007.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span116965-119091Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852533_01555RefSeq proteinWP_055055926.1
Context group ID
GCF_001405215::NZ_CZBA01000007.1::G00024Context members
ARA06_RS07605
Partner locus tags
ARA06_RS07605
Partner old locus tags
ERS852533_01555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055926.1Primary protein accession used for annex mappings.
UniProt accessionA0A174NRE6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174NRE6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA06_RS07605Primary locus identifier stored in the genes table.
Old locus tagERS852533_01555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBA01000007.1Sequence record reported by the local genomic context database.
Genomic interval116 965-119 091 nt2 127 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 965-119 091 ntGCF_001405215::NZ_CZBA01000007.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405215::NZ_CZBA01000007.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBA01000007.1All displayed genes belong to this local TCS context.
Neighborhood span116 965-119 091 nt2 127 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 965 nt119 091 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA06_RS07605GCF_001405215#ARA06_RS07605
RRRpfGCurrent focus
116 965-119 091 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS07605The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0026992
Simplified PFAM architecture for RROC_0026992
PFAM domain coverage: 396 / 708 aa (55.9%)
1 aa708 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[136-278] | Response_reg[308-419] | HD_5[480-620]
- Domain count: 3
- Matched identifier: RROC_0026992
- Positioned domains: GGDEF 136-278 ; GGDEF 136-278 ; Response_reg 308-419 ; Response_reg 308-419 ; HD_5 480-620 ; HD_5 480-620
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS07605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405215
Assembly14207_7#44 · Scaffoldhaploid
Genome composition3 904 077 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 114 · HK 60 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key