1 PAS_3#1
168-256 aa · 89 aa · 8.3% of protein
Raw token
PAS_3:168:4.2e-21:256:89:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA06_RS07210
Histidine kinase, Hybrid
Blautia obeum · GCF_001405215
ClassHKTypeHybridLength1068 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405215#ARA06_RS07210Stable P2CS identifier used across views.
GenomeGCF_001405215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1068 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage505 / 1068 aa (47.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1068 aa
Domain-by-domain annotation5 items
2 HisKA#2
558-624 aa · 67 aa · 6.3% of protein
Raw token
HisKA:558:2.43e-16:624:67:643 HATPase_c#3
671-785 aa · 115 aa · 10.8% of protein
Raw token
HATPase_c:671:4.33e-31:785:115:1094 Response_reg#4
805-921 aa · 117 aa · 11.0% of protein
Raw token
Response_reg:805:3.43e-19:921:117:1115 Response_reg#5
949-1065 aa · 117 aa · 11.0% of protein
Raw token
Response_reg:949:2.25e-30:1065:117:111- Raw architecture: PAS_3:168:4.2e-21:256:89:89#HisKA:558:2.43e-16:624:67:64#HATPase_c:671:4.33e-31:785:115:109#Response_reg:805:3.43e-19:921:117:111#Response_reg:949:2.25e-30:1065:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405215::NZ_CZBA01000007.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span13460-16666Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852533_01476RefSeq proteinWP_055055883.1
Context group ID
GCF_001405215::NZ_CZBA01000007.1::G00022Context members
ARA06_RS07210
Partner locus tags
ARA06_RS07210
Partner old locus tags
ERS852533_01476
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055883.1Primary protein accession used for annex mappings.
UniProt accessionA0A174NLK4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174NLK4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA06_RS07210Primary locus identifier stored in the genes table.
Old locus tagERS852533_01476Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBA01000007.1Sequence record reported by the local genomic context database.
Genomic interval13 460-16 666 nt3 207 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 460-16 666 ntGCF_001405215::NZ_CZBA01000007.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405215::NZ_CZBA01000007.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBA01000007.1All displayed genes belong to this local TCS context.
Neighborhood span13 460-16 666 nt3 207 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 460 nt16 666 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA06_RS07210GCF_001405215#ARA06_RS07210
HKHybridCurrent focus
13 460-16 666 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS14735Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0247599
Simplified PFAM architecture for HKOC_0247599
PFAM domain coverage: 506 / 1068 aa (47.4%)
1 aa1068 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[167-256] | HisKA[558-624] | HATPase_c[671-787] | Response_reg[805-920] | Response_reg[949-1064]
- Domain count: 5
- Matched identifier: HKOC_0247599
- Positioned domains: PAS_3 167-256 ; HisKA 558-624 ; HATPase_c 671-787 ; Response_reg 805-920 ; Response_reg 949-1064
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS14735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405215
Assembly14207_7#44 · Scaffoldhaploid
Genome composition3 904 077 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 114 · HK 60 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key