1 Response_reg#1
5-114 aa · 110 aa · 21.2% of protein
Raw token
Response_reg:5:6.23e-28:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA06_RS06035
Response regulator, unclassified
Blautia obeum · GCF_001405215
ClassRRTypeunclassifiedLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405215#ARA06_RS06035Stable P2CS identifier used across views.
GenomeGCF_001405215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 519 aa (36.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
426-467 aa · 42 aa · 8.1% of protein
Raw token
HTH_AraC:426:0.00000057:467:42:423 HTH_AraC#3
480-516 aa · 37 aa · 7.1% of protein
Raw token
HTH_AraC:480:0.00000243:516:37:42- Raw architecture: Response_reg:5:6.23e-28:114:110:111#HTH_AraC:426:0.00000057:467:42:42#HTH_AraC:480:0.00000243:516:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405215::NZ_CZBA01000005.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154698-158004Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852533_01235RefSeq proteinWP_055055707.1
Context group ID
GCF_001405215::NZ_CZBA01000005.1::G00018Context members
ARA06_RS06030ARA06_RS06035
Partner locus tags
ARA06_RS06030ARA06_RS06035
Partner old locus tags
ERS852533_01234ERS852533_01235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055707.1Primary protein accession used for annex mappings.
UniProt accessionA0A174N235Primary UniProt accession resolved in the annex database.
UniProt IDA0A174N235_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA06_RS06035Primary locus identifier stored in the genes table.
Old locus tagERS852533_01235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBA01000005.1Sequence record reported by the local genomic context database.
Genomic interval156 445-158 004 nt1 560 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span154 698-158 004 ntGCF_001405215::NZ_CZBA01000005.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405215::NZ_CZBA01000005.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBA01000005.1All displayed genes belong to this local TCS context.
Neighborhood span154 698-158 004 nt3 307 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 698 nt158 004 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA06_RS06030GCF_001405215#ARA06_RS06030
HKClassic
154 698-156 431 nt · Forward (+)
ARA06_RS06035GCF_001405215#ARA06_RS06035
RRunclassifiedCurrent focus
156 445-158 004 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS06035The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127467
Simplified PFAM architecture for RROC_0127467
PFAM domain coverage: 189 / 519 aa (36.4%)
1 aa519 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[440-517]
- Domain count: 2
- Matched identifier: RROC_0127467
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; HTH_18 440-517 ; HTH_18 440-517
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS06035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405215
Assembly14207_7#44 · Scaffoldhaploid
Genome composition3 904 077 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 114 · HK 60 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key