1 HAMP#1
184-256 aa · 73 aa · 15.3% of protein
Raw token
HAMP:184:0.00000000298:256:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA06_RS05975
Histidine kinase, Classic
Blautia obeum · GCF_001405215
ClassHKTypeClassicLength478 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405215#ARA06_RS05975Stable P2CS identifier used across views.
GenomeGCF_001405215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length478 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 478 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa478 aa
Domain-by-domain annotation3 items
2 His_kinase#2
273-352 aa · 80 aa · 16.7% of protein
Raw token
His_kinase:273:1.2e-30:352:80:803 HATPase_c#3
372-470 aa · 99 aa · 20.7% of protein
Raw token
HATPase_c:372:0.0000000000000194:470:104:109- Raw architecture: HAMP:184:0.00000000298:256:73:69#His_kinase:273:1.2e-30:352:80:80#HATPase_c:372:0.0000000000000194:470:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405215::NZ_CZBA01000005.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139883-142965Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852533_01223RefSeq proteinWP_055055697.1
Context group ID
GCF_001405215::NZ_CZBA01000005.1::G00017Context members
ARA06_RS05975ARA06_RS05980
Partner locus tags
ARA06_RS05975ARA06_RS05980
Partner old locus tags
ERS852533_01223ERS852533_01224
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055697.1Primary protein accession used for annex mappings.
UniProt accessionA0A174MTP4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174MTP4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA06_RS05975Primary locus identifier stored in the genes table.
Old locus tagERS852533_01223Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBA01000005.1Sequence record reported by the local genomic context database.
Genomic interval139 883-141 319 nt1 437 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span139 883-142 965 ntGCF_001405215::NZ_CZBA01000005.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405215::NZ_CZBA01000005.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBA01000005.1All displayed genes belong to this local TCS context.
Neighborhood span139 883-142 965 nt3 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 883 nt142 965 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA06_RS05975GCF_001405215#ARA06_RS05975
HKClassicCurrent focus
139 883-141 319 nt · Reverse (-)
ARA06_RS05980GCF_001405215#ARA06_RS05980
RRunclassified
141 316-142 965 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS05975The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1637855
Simplified PFAM architecture for HKOC_1637855
PFAM domain coverage: 225 / 478 aa (47.1%)
1 aa478 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[207-257] | His_kinase[274-350] | HATPase_c[374-470]
- Domain count: 3
- Matched identifier: HKOC_1637855
- Positioned domains: HAMP 207-257 ; His_kinase 274-350 ; HATPase_c 374-470
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS05975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405215
Assembly14207_7#44 · Scaffoldhaploid
Genome composition3 904 077 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 114 · HK 60 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key