1 HisKA#1
203-273 aa · 71 aa · 16.6% of protein
Raw token
HisKA:203:0.000000000000232:273:71:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA06_RS04235
Histidine kinase, Classic
Blautia obeum · GCF_001405215
ClassHKTypeClassicLength427 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405215#ARA06_RS04235Stable P2CS identifier used across views.
GenomeGCF_001405215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length427 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 427 aa (41.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa427 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
319-425 aa · 107 aa · 25.1% of protein
Raw token
HATPase_c:319:7.99e-30:425:108:109- Raw architecture: HisKA:203:0.000000000000232:273:71:64#HATPase_c:319:7.99e-30:425:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405215::NZ_CZBA01000003.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span170223-172220Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852533_00863RefSeq proteinWP_055055531.1
Context group ID
GCF_001405215::NZ_CZBA01000003.1::G00014Context members
ARA06_RS04230ARA06_RS04235
Partner locus tags
ARA06_RS04230ARA06_RS04235
Partner old locus tags
ERS852533_00862ERS852533_00863
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055531.1Primary protein accession used for annex mappings.
UniProt accessionA0A174LUP7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174LUP7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA06_RS04235Primary locus identifier stored in the genes table.
Old locus tagERS852533_00863Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBA01000003.1Sequence record reported by the local genomic context database.
Genomic interval170 937-172 220 nt1 284 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span170 223-172 220 ntGCF_001405215::NZ_CZBA01000003.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405215::NZ_CZBA01000003.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBA01000003.1All displayed genes belong to this local TCS context.
Neighborhood span170 223-172 220 nt1 998 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 223 nt172 220 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA06_RS04230GCF_001405215#ARA06_RS04230
RROmpR
170 223-170 936 nt · Reverse (-)
ARA06_RS04235GCF_001405215#ARA06_RS04235
HKClassicCurrent focus
170 937-172 220 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS04235The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2199936
Simplified PFAM architecture for HKOC_2199936
PFAM domain coverage: 177 / 427 aa (41.5%)
1 aa427 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[203-273] | HATPase_c[320-425]
- Domain count: 2
- Matched identifier: HKOC_2199936
- Positioned domains: HisKA 203-273 ; HATPase_c 320-425
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS04235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405215
Assembly14207_7#44 · Scaffoldhaploid
Genome composition3 904 077 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 114 · HK 60 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key