1 Response_reg#1
8-117 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:8:9.53e-30:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA06_RS04230
Response regulator OmpR family
Blautia obeum · GCF_001405215
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405215#ARA06_RS04230Stable P2CS identifier used across views.
GenomeGCF_001405215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 237 aa (76.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
163-234 aa · 72 aa · 30.4% of protein
Raw token
Trans_reg_C:163:1.33e-20:234:72:77- Raw architecture: Response_reg:8:9.53e-30:117:111:111#Trans_reg_C:163:1.33e-20:234:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405215::NZ_CZBA01000003.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span170223-172220Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852533_00862RefSeq proteinWP_055055530.1
Context group ID
GCF_001405215::NZ_CZBA01000003.1::G00014Context members
ARA06_RS04230ARA06_RS04235
Partner locus tags
ARA06_RS04230ARA06_RS04235
Partner old locus tags
ERS852533_00862ERS852533_00863
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055530.1Primary protein accession used for annex mappings.
UniProt accessionA0A174LUB9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174LUB9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA06_RS04230Primary locus identifier stored in the genes table.
Old locus tagERS852533_00862Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBA01000003.1Sequence record reported by the local genomic context database.
Genomic interval170 223-170 936 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span170 223-172 220 ntGCF_001405215::NZ_CZBA01000003.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405215::NZ_CZBA01000003.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBA01000003.1All displayed genes belong to this local TCS context.
Neighborhood span170 223-172 220 nt1 998 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 223 nt172 220 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA06_RS04230GCF_001405215#ARA06_RS04230
RROmpRCurrent focus
170 223-170 936 nt · Reverse (-)
ARA06_RS04235GCF_001405215#ARA06_RS04235
HKClassic
170 937-172 220 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS04230The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0964696
Simplified PFAM architecture for RROC_0964696
PFAM domain coverage: 182 / 237 aa (76.8%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-116] | Trans_reg_C[162-234]
- Domain count: 2
- Matched identifier: RROC_0964696
- Positioned domains: Response_reg 8-116 ; Response_reg 8-116 ; Trans_reg_C 162-234 ; Trans_reg_C 162-234
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS04230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405215
Assembly14207_7#44 · Scaffoldhaploid
Genome composition3 904 077 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 114 · HK 60 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key