1 PAS_3#1
34-107 aa · 74 aa · 11.2% of protein
Raw token
PAS_3:34:0.00000586:107:78:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA06_RS02925
Histidine kinase, Hybrid
Blautia obeum · GCF_001405215
ClassHKTypeHybridLength661 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405215#ARA06_RS02925Stable P2CS identifier used across views.
GenomeGCF_001405215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length661 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage372 / 661 aa (56.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa661 aa
Domain-by-domain annotation4 items
2 HisKA#2
285-351 aa · 67 aa · 10.1% of protein
Raw token
HisKA:285:0.0000000000000182:351:67:643 HATPase_c#3
398-512 aa · 115 aa · 17.4% of protein
Raw token
HATPase_c:398:6.33e-29:512:115:1094 Response_reg#4
539-654 aa · 116 aa · 17.5% of protein
Raw token
Response_reg:539:2.43e-32:654:116:111- Raw architecture: PAS_3:34:0.00000586:107:78:89#HisKA:285:0.0000000000000182:351:67:64#HATPase_c:398:6.33e-29:512:115:109#Response_reg:539:2.43e-32:654:116:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405215::NZ_CZBA01000002.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span234416-236401Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852533_00593RefSeq proteinWP_055055403.1
Context group ID
GCF_001405215::NZ_CZBA01000002.1::G00009Context members
ARA06_RS02925
Partner locus tags
ARA06_RS02925
Partner old locus tags
ERS852533_00593
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055403.1Primary protein accession used for annex mappings.
UniProt accessionA0A174LAD6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174LAD6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA06_RS02925Primary locus identifier stored in the genes table.
Old locus tagERS852533_00593Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBA01000002.1Sequence record reported by the local genomic context database.
Genomic interval234 416-236 401 nt1 986 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span234 416-236 401 ntGCF_001405215::NZ_CZBA01000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405215::NZ_CZBA01000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBA01000002.1All displayed genes belong to this local TCS context.
Neighborhood span234 416-236 401 nt1 986 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
234 416 nt236 401 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA06_RS02925GCF_001405215#ARA06_RS02925
HKHybridCurrent focus
234 416-236 401 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS02925The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0870008
Simplified PFAM architecture for HKOC_0870008
PFAM domain coverage: 299 / 661 aa (45.2%)
1 aa661 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[285-351] | HATPase_c[398-513] | Response_reg[539-654]
- Domain count: 3
- Matched identifier: HKOC_0870008
- Positioned domains: HisKA 285-351 ; HATPase_c 398-513 ; Response_reg 539-654
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS02925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405215
Assembly14207_7#44 · Scaffoldhaploid
Genome composition3 904 077 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 114 · HK 60 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key