1 SBP_bac_3#1
38-255 aa · 218 aa · 23.6% of protein
Raw token
SBP_bac_3:38:9.42e-28:255:235:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA06_RS02740
Histidine kinase, Hybrid
Blautia obeum · GCF_001405215
ClassHKTypeHybridLength924 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405215#ARA06_RS02740Stable P2CS identifier used across views.
GenomeGCF_001405215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length924 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage717 / 924 aa (77.6%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa924 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
277-474 aa · 198 aa · 21.4% of protein
Raw token
SBP_bac_3:277:2.32e-18:474:213:2243 HisKA#3
548-613 aa · 66 aa · 7.1% of protein
Raw token
HisKA:548:2.87e-18:613:66:644 HATPase_c#4
660-776 aa · 117 aa · 12.7% of protein
Raw token
HATPase_c:660:1.9e-28:776:117:1095 Response_reg#5
801-918 aa · 118 aa · 12.8% of protein
Raw token
Response_reg:801:1.04e-31:918:118:111- Raw architecture: SBP_bac_3:38:9.42e-28:255:235:224#SBP_bac_3:277:2.32e-18:474:213:224#HisKA:548:2.87e-18:613:66:64#HATPase_c:660:1.9e-28:776:117:109#Response_reg:801:1.04e-31:918:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405215::NZ_CZBA01000002.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span192043-194817Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852533_00554RefSeq proteinWP_207642946.1
Context group ID
GCF_001405215::NZ_CZBA01000002.1::G00008Context members
ARA06_RS02740
Partner locus tags
ARA06_RS02740
Partner old locus tags
ERS852533_00554
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207642946.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA06_RS02740Primary locus identifier stored in the genes table.
Old locus tagERS852533_00554Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBA01000002.1Sequence record reported by the local genomic context database.
Genomic interval192 043-194 817 nt2 775 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span192 043-194 817 ntGCF_001405215::NZ_CZBA01000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405215::NZ_CZBA01000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBA01000002.1All displayed genes belong to this local TCS context.
Neighborhood span192 043-194 817 nt2 775 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
192 043 nt194 817 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA06_RS02740GCF_001405215#ARA06_RS02740
HKHybridCurrent focus
192 043-194 817 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS02740The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0361820
Simplified PFAM architecture for HKOC_0361820
PFAM domain coverage: 501 / 924 aa (54.2%)
1 aa924 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[42-242] | HisKA[548-613] | HATPase_c[661-776] | Response_reg[801-918]
- Domain count: 4
- Matched identifier: HKOC_0361820
- Positioned domains: SBP_bac_3 42-242 ; HisKA 548-613 ; HATPase_c 661-776 ; Response_reg 801-918
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS02740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405215
Assembly14207_7#44 · Scaffoldhaploid
Genome composition3 904 077 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 114 · HK 60 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key