1 HAMP#1
154-224 aa · 71 aa · 15.8% of protein
Raw token
HAMP:154:0.0000000000599:224:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS14725
Histidine kinase, Classic
Dorea longicatena · GCF_001405135
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405135#ARC33_RS14725Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 450 aa (54.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-295 aa · 65 aa · 14.4% of protein
Raw token
HisKA:231:0.00000000000000284:295:65:643 HATPase_c#3
339-448 aa · 110 aa · 24.4% of protein
Raw token
HATPase_c:339:1.93e-32:448:110:109- Raw architecture: HAMP:154:0.0000000000599:224:71:69#HisKA:231:0.00000000000000284:295:65:64#HATPase_c:339:1.93e-32:448:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405135::NZ_CYYY01000028.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5980-8003Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_02990RefSeq proteinWP_055182616.1
Context group ID
GCF_001405135::NZ_CYYY01000028.1::G00032Context members
ARC33_RS14720ARC33_RS14725
Partner locus tags
ARC33_RS14720ARC33_RS14725
Partner old locus tags
ERS852423_02989ERS852423_02990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055182616.1Primary protein accession used for annex mappings.
UniProt accessionA0A174EIT6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174EIT6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS14725Primary locus identifier stored in the genes table.
Old locus tagERS852423_02990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000028.1Sequence record reported by the local genomic context database.
Genomic interval6 651-8 003 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 980-8 003 ntGCF_001405135::NZ_CYYY01000028.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000028.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000028.1All displayed genes belong to this local TCS context.
Neighborhood span5 980-8 003 nt2 024 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 980 nt8 003 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARC33_RS14720GCF_001405135#ARC33_RS14720
RROmpR
5 980-6 654 nt · Forward (+)
ARC33_RS14725GCF_001405135#ARC33_RS14725
HKClassicCurrent focus
6 651-8 003 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405135#ARC33_RS14725The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1963327
Simplified PFAM architecture for HKOC_1963327
PFAM domain coverage: 231 / 450 aa (51.3%)
1 aa450 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-224] | HisKA[230-295] | HATPase_c[339-449]
- Domain count: 3
- Matched identifier: HKOC_1963327
- Positioned domains: HAMP 171-224 ; HisKA 230-295 ; HATPase_c 339-449
Cluster members and taxonomy
Representative gene: GCF_001405135#ARC33_RS14725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key