1 HAMP#1
152-222 aa · 71 aa · 15.5% of protein
Raw token
HAMP:152:0.0000427:222:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS14345
Histidine kinase, Classic
Dorea longicatena · GCF_001405135
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405135#ARC33_RS14345Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 458 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-294 aa · 62 aa · 13.5% of protein
Raw token
HisKA:233:0.0000000000268:294:62:643 HATPase_c#3
346-451 aa · 106 aa · 23.1% of protein
Raw token
HATPase_c:346:2.11e-17:451:106:109- Raw architecture: HAMP:152:0.0000427:222:71:69#HisKA:233:0.0000000000268:294:62:64#HATPase_c:346:2.11e-17:451:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405135::NZ_CYYY01000024.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6571-8597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_02917RefSeq proteinWP_055182534.1
Context group ID
GCF_001405135::NZ_CYYY01000024.1::G00030Context members
ARC33_RS14345ARC33_RS14350
Partner locus tags
ARC33_RS14345ARC33_RS14350
Partner old locus tags
ERS852423_02917ERS852423_02918
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055182534.1Primary protein accession used for annex mappings.
UniProt accessionA0A174E5J2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174E5J2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS14345Primary locus identifier stored in the genes table.
Old locus tagERS852423_02917Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000024.1Sequence record reported by the local genomic context database.
Genomic interval6 571-7 947 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 571-8 597 ntGCF_001405135::NZ_CYYY01000024.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000024.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000024.1All displayed genes belong to this local TCS context.
Neighborhood span6 571-8 597 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 571 nt8 597 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARC33_RS14345GCF_001405135#ARC33_RS14345
HKClassicCurrent focus
6 571-7 947 nt · Reverse (-)
ARC33_RS14350GCF_001405135#ARC33_RS14350
RROmpR
7 935-8 597 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405135#ARC33_RS14345The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1860013
Simplified PFAM architecture for HKOC_1860013
PFAM domain coverage: 166 / 458 aa (36.2%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-294] | HATPase_c[347-451]
- Domain count: 2
- Matched identifier: HKOC_1860013
- Positioned domains: HisKA 234-294 ; HATPase_c 347-451
Cluster members and taxonomy
Representative gene: GCF_001405135#ARC33_RS14345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key