1 HisKA#1
151-214 aa · 64 aa · 15.7% of protein
Raw token
HisKA:151:0.0000000000148:214:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS13205
Histidine kinase, Classic
Dorea longicatena · GCF_001405135
ClassHKTypeClassicLength407 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405135#ARC33_RS13205Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length407 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 407 aa (42.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa407 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
263-371 aa · 109 aa · 26.8% of protein
Raw token
HATPase_c:263:9.94e-26:371:110:109- Raw architecture: HisKA:151:0.0000000000148:214:64:64#HATPase_c:263:9.94e-26:371:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405135::NZ_CYYY01000017.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42506-44408Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_02689RefSeq proteinWP_055182290.1
Context group ID
GCF_001405135::NZ_CYYY01000017.1::G00027Context members
ARC33_RS13205ARC33_RS13210
Partner locus tags
ARC33_RS13205ARC33_RS13210
Partner old locus tags
ERS852423_02689ERS852423_02690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055182290.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DGT6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DGT6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS13205Primary locus identifier stored in the genes table.
Old locus tagERS852423_02689Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000017.1Sequence record reported by the local genomic context database.
Genomic interval42 506-43 729 nt1 224 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 506-44 408 ntGCF_001405135::NZ_CYYY01000017.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000017.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000017.1All displayed genes belong to this local TCS context.
Neighborhood span42 506-44 408 nt1 903 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 506 nt44 408 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARC33_RS13205GCF_001405135#ARC33_RS13205
HKClassicCurrent focus
42 506-43 729 nt · Reverse (-)
ARC33_RS13210GCF_001405135#ARC33_RS13210
RROmpR
43 719-44 408 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405135#ARC33_RS13205The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2380610
Simplified PFAM architecture for HKOC_2380610
PFAM domain coverage: 174 / 407 aa (42.8%)
1 aa407 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[152-214] | HATPase_c[263-373]
- Domain count: 2
- Matched identifier: HKOC_2380610
- Positioned domains: HisKA 152-214 ; HATPase_c 263-373
Cluster members and taxonomy
Representative gene: GCF_001405135#ARC33_RS13205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key