1 HisKA#1
142-208 aa · 67 aa · 18.4% of protein
Raw token
HisKA:142:0.00000000000681:208:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS12090
Histidine kinase, Classic
Dorea longicatena · GCF_001405135
ClassHKTypeClassicLength364 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405135#ARC33_RS12090Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length364 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 364 aa (48.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa364 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
253-360 aa · 108 aa · 29.7% of protein
Raw token
HATPase_c:253:5.88e-23:360:109:109- Raw architecture: HisKA:142:0.00000000000681:208:67:64#HATPase_c:253:5.88e-23:360:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405135::NZ_CYYY01000014.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9345-11197Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_02462RefSeq proteinWP_055182059.1
Context group ID
GCF_001405135::NZ_CYYY01000014.1::G00026Context members
ARC33_RS12085ARC33_RS12090
Partner locus tags
ARC33_RS12085ARC33_RS12090
Partner old locus tags
ERS852423_02461ERS852423_02462
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055182059.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS12090Primary locus identifier stored in the genes table.
Old locus tagERS852423_02462Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000014.1Sequence record reported by the local genomic context database.
Genomic interval10 061-11 197 nt1 137 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 345-11 197 ntGCF_001405135::NZ_CYYY01000014.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000014.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000014.1All displayed genes belong to this local TCS context.
Neighborhood span9 345-11 197 nt1 853 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 345 nt11 197 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARC33_RS12085GCF_001405135#ARC33_RS12085
RROmpR
9 345-10 058 nt · Reverse (-)
ARC33_RS12090GCF_001405135#ARC33_RS12090
HKClassicCurrent focus
10 061-11 197 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405135#ARC33_RS12090The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2725349
Simplified PFAM architecture for HKOC_2725349
PFAM domain coverage: 281 / 364 aa (77.2%)
1 aa364 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[22-128] | HisKA[142-207] | HATPase_c[254-361]
- Domain count: 3
- Matched identifier: HKOC_2725349
- Positioned domains: DUF4118 22-128 ; HisKA 142-207 ; HATPase_c 254-361
Cluster members and taxonomy
Representative gene: GCF_001405135#ARC33_RS12090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key