1 Response_reg#1
7-116 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:7:1.81e-33:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS12085
Response regulator OmpR family
Dorea longicatena · GCF_001405135
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405135#ARC33_RS12085Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:154:1.17e-23:230:77:77- Raw architecture: Response_reg:7:1.81e-33:116:111:111#Trans_reg_C:154:1.17e-23:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405135::NZ_CYYY01000014.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9345-11197Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_02461RefSeq proteinWP_055182057.1
Context group ID
GCF_001405135::NZ_CYYY01000014.1::G00026Context members
ARC33_RS12085ARC33_RS12090
Partner locus tags
ARC33_RS12085ARC33_RS12090
Partner old locus tags
ERS852423_02461ERS852423_02462
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055182057.1Primary protein accession used for annex mappings.
UniProt accessionA0A174CYD4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174CYD4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS12085Primary locus identifier stored in the genes table.
Old locus tagERS852423_02461Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000014.1Sequence record reported by the local genomic context database.
Genomic interval9 345-10 058 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 345-11 197 ntGCF_001405135::NZ_CYYY01000014.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000014.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000014.1All displayed genes belong to this local TCS context.
Neighborhood span9 345-11 197 nt1 853 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 345 nt11 197 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARC33_RS12085GCF_001405135#ARC33_RS12085
RROmpRCurrent focus
9 345-10 058 nt · Reverse (-)
ARC33_RS12090GCF_001405135#ARC33_RS12090
HKClassic
10 061-11 197 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405135#ARC33_RS12085The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0964695
Simplified PFAM architecture for RROC_0964695
PFAM domain coverage: 187 / 237 aa (78.9%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_0964695
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_001405135#ARC33_RS12085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key