1 HAMP#1
172-241 aa · 70 aa · 14.9% of protein
Raw token
HAMP:172:0.00000000000196:241:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS11955
Histidine kinase, Classic
Dorea longicatena · GCF_001405135
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405135#ARC33_RS11955Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 470 aa (51.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-305 aa · 60 aa · 12.8% of protein
Raw token
HisKA:246:2.92e-16:305:60:643 HATPase_c#3
357-466 aa · 110 aa · 23.4% of protein
Raw token
HATPase_c:357:1.85e-29:466:110:109- Raw architecture: HAMP:172:0.00000000000196:241:70:69#HisKA:246:2.92e-16:305:60:64#HATPase_c:357:1.85e-29:466:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405135::NZ_CYYY01000013.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58363-60492Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_02436RefSeq proteinWP_055182014.1
Context group ID
GCF_001405135::NZ_CYYY01000013.1::G00024Context members
ARC33_RS11955ARC33_RS11960
Partner locus tags
ARC33_RS11955ARC33_RS11960
Partner old locus tags
ERS852423_02436ERS852423_02437
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055182014.1Primary protein accession used for annex mappings.
UniProt accessionA0A174MQZ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174MQZ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS11955Primary locus identifier stored in the genes table.
Old locus tagERS852423_02436Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000013.1Sequence record reported by the local genomic context database.
Genomic interval58 363-59 775 nt1 413 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 363-60 492 ntGCF_001405135::NZ_CYYY01000013.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000013.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000013.1All displayed genes belong to this local TCS context.
Neighborhood span58 363-60 492 nt2 130 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 363 nt60 492 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARC33_RS11955GCF_001405135#ARC33_RS11955
HKClassicCurrent focus
58 363-59 775 nt · Reverse (-)
ARC33_RS11960GCF_001405135#ARC33_RS11960
RROmpR
59 791-60 492 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405135#ARC33_RS11955The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1718142
Simplified PFAM architecture for HKOC_1718142
PFAM domain coverage: 220 / 470 aa (46.8%)
1 aa470 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[196-241] | HisKA[246-309] | HATPase_c[358-467]
- Domain count: 3
- Matched identifier: HKOC_1718142
- Positioned domains: HAMP 196-241 ; HisKA 246-309 ; HATPase_c 358-467
Cluster members and taxonomy
Representative gene: GCF_001405135#ARC33_RS11955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key