1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:3.17e-24:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS09525
Response regulator OmpR family
Dorea longicatena · GCF_001405135
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405135#ARC33_RS09525Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 224 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-215 aa · 71 aa · 31.7% of protein
Raw token
Trans_reg_C:145:2.17e-26:215:76:77- Raw architecture: Response_reg:4:3.17e-24:113:111:111#Trans_reg_C:145:2.17e-26:215:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405135::NZ_CYYY01000008.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span108443-110343Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_01951RefSeq proteinWP_005333533.1
Context group ID
GCF_001405135::NZ_CYYY01000008.1::G00018Context members
ARC33_RS09525ARC33_RS09530
Partner locus tags
ARC33_RS09525ARC33_RS09530
Partner old locus tags
ERS852423_01951ERS852423_01952
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005333533.1Primary protein accession used for annex mappings.
UniProt accessionV8C7X8Primary UniProt accession resolved in the annex database.
UniProt IDV8C7X8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS09525Primary locus identifier stored in the genes table.
Old locus tagERS852423_01951Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000008.1Sequence record reported by the local genomic context database.
Genomic interval108 443-109 117 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108 443-110 343 ntGCF_001405135::NZ_CYYY01000008.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000008.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000008.1All displayed genes belong to this local TCS context.
Neighborhood span108 443-110 343 nt1 901 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 443 nt110 343 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARC33_RS09525GCF_001405135#ARC33_RS09525
RROmpRCurrent focus
108 443-109 117 nt · Forward (+)
ARC33_RS09530GCF_001405135#ARC33_RS09530
HKClassic
109 090-110 343 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS09015Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529304
Simplified PFAM architecture for RROC_1529304
PFAM domain coverage: 180 / 224 aa (80.4%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-216]
- Domain count: 2
- Matched identifier: RROC_1529304
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-216 ; Trans_reg_C 146-216
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS09015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key