1 Response_reg#1
10-121 aa · 112 aa · 48.3% of protein
Raw token
Response_reg:10:1.44e-29:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS09385
Response regulator OmpR family
Dorea longicatena · GCF_001405135
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405135#ARC33_RS09385Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 232 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-230 aa · 72 aa · 31.0% of protein
Raw token
Trans_reg_C:159:2.25e-29:230:73:77- Raw architecture: Response_reg:10:1.44e-29:121:113:111#Trans_reg_C:159:2.25e-29:230:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405135::NZ_CYYY01000008.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span84878-85576Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_01923RefSeq proteinWP_005333481.1
Context group ID
GCF_001405135::NZ_CYYY01000008.1::G00016Context members
ARC33_RS09385
Partner locus tags
ARC33_RS09385
Partner old locus tags
ERS852423_01923
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005333481.1Primary protein accession used for annex mappings.
UniProt accessionA0A4Q1RF23Primary UniProt accession resolved in the annex database.
UniProt IDA0A4Q1RF23_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS09385Primary locus identifier stored in the genes table.
Old locus tagERS852423_01923Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000008.1Sequence record reported by the local genomic context database.
Genomic interval84 878-85 576 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 878-85 576 ntGCF_001405135::NZ_CYYY01000008.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000008.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000008.1All displayed genes belong to this local TCS context.
Neighborhood span84 878-85 576 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 878 nt85 576 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARC33_RS09385GCF_001405135#ARC33_RS09385
RROmpRCurrent focus
84 878-85 576 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467225#DW918_RS00425Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888324
Simplified PFAM architecture for RROC_0888324
PFAM domain coverage: 183 / 240 aa (76.3%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[18-129] | Trans_reg_C[168-238]
- Domain count: 2
- Matched identifier: RROC_0888324
- Positioned domains: Response_reg 18-129 ; Response_reg 18-129 ; Trans_reg_C 168-238 ; Trans_reg_C 168-238
Cluster members and taxonomy
Representative gene: GCF_003467225#DW918_RS00425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key