1 Response_reg#1
6-115 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:6:3.27e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS06170
Response regulator OmpR family
Dorea longicatena · GCF_001405135
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405135#ARC33_RS06170Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 240 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-233 aa · 78 aa · 32.5% of protein
Raw token
Trans_reg_C:156:5.25e-31:233:78:77- Raw architecture: Response_reg:6:3.27e-36:115:111:111#Trans_reg_C:156:5.25e-31:233:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405135::NZ_CYYY01000004.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span170997-172962Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_01268RefSeq proteinWP_006426324.1
Context group ID
GCF_001405135::NZ_CYYY01000004.1::G00007Context members
ARC33_RS06165ARC33_RS06170
Partner locus tags
ARC33_RS06165ARC33_RS06170
Partner old locus tags
ERS852423_01267ERS852423_01268
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006426324.1Primary protein accession used for annex mappings.
UniProt accessionA6BFM6Primary UniProt accession resolved in the annex database.
UniProt IDA6BFM6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS06170Primary locus identifier stored in the genes table.
Old locus tagERS852423_01268Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000004.1Sequence record reported by the local genomic context database.
Genomic interval172 240-172 962 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span170 997-172 962 ntGCF_001405135::NZ_CYYY01000004.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000004.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000004.1All displayed genes belong to this local TCS context.
Neighborhood span170 997-172 962 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 997 nt172 962 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARC33_RS06165GCF_001405135#ARC33_RS06165
HKClassic
170 997-172 277 nt · Reverse (-)
ARC33_RS06170GCF_001405135#ARC33_RS06170
RROmpRCurrent focus
172 240-172 962 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS01375Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882178
Simplified PFAM architecture for RROC_0882178
PFAM domain coverage: 188 / 240 aa (78.3%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[156-233]
- Domain count: 2
- Matched identifier: RROC_0882178
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 156-233 ; Trans_reg_C 156-233
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS01375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key