1 HAMP#1
130-197 aa · 68 aa · 15.7% of protein
Raw token
HAMP:130:0.0000291:197:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB71_RS07725
Histidine kinase, Classic
Clostridium paraputrificum · GCF_001404795
ClassHKTypeClassicLength433 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404795#ARB71_RS07725Stable P2CS identifier used across views.
GenomeGCF_001404795Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length433 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 433 aa (56.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa433 aa
Domain-by-domain annotation3 items
2 HisKA#2
211-276 aa · 66 aa · 15.2% of protein
Raw token
HisKA:211:8.45e-17:276:66:643 HATPase_c#3
324-433 aa · 110 aa · 25.4% of protein
Raw token
HATPase_c:324:1.71e-17:433:111:109- Raw architecture: HAMP:130:0.0000291:197:68:69#HisKA:211:8.45e-17:276:66:64#HATPase_c:324:1.71e-17:433:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404795::NZ_CYZW01000004.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81836-83820Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852472_01596RefSeq proteinWP_055253903.1
Context group ID
GCF_001404795::NZ_CYZW01000004.1::G00014Context members
ARB71_RS07720ARB71_RS07725
Partner locus tags
ARB71_RS07720ARB71_RS07725
Partner old locus tags
ERS852472_01595ERS852472_01596
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055253903.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB71_RS07725Primary locus identifier stored in the genes table.
Old locus tagERS852472_01596Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZW01000004.1Sequence record reported by the local genomic context database.
Genomic interval82 519-83 820 nt1 302 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span81 836-83 820 ntGCF_001404795::NZ_CYZW01000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404795::NZ_CYZW01000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZW01000004.1All displayed genes belong to this local TCS context.
Neighborhood span81 836-83 820 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 836 nt83 820 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB71_RS07720GCF_001404795#ARB71_RS07720
RROmpR
81 836-82 522 nt · Forward (+)
ARB71_RS07725GCF_001404795#ARB71_RS07725
HKClassicCurrent focus
82 519-83 820 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS07725The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2141409
Simplified PFAM architecture for HKOC_2141409
PFAM domain coverage: 214 / 433 aa (49.4%)
1 aa433 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[159-197] | HisKA[211-276] | HATPase_c[324-432]
- Domain count: 3
- Matched identifier: HKOC_2141409
- Positioned domains: HAMP 159-197 ; HisKA 211-276 ; HATPase_c 324-432
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS07725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001404795
Assembly13470_2#76 · Scaffoldhaploid
Genome composition3 597 627 bp · 29,5% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key